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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGCTTGCGAGAGCCGTCTACAATGGCGCCGACGTCTACCTCCTTGACGATCCTTTCAGCGCCGTCGATGCGCATACCGCTGCGACACTGTTCAATgtaagaaatttttcatctcagtttcagaggccactgtcatattctcaggatcattctatttatagatgtgttaccttttcctctgtag

Basic information

species Oryza sativa
transcript LOC_Os05g10730.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g10730.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G20770.1 (Glycine max), 5'ss of exon 3
GATTCAGCTTGCGAGAGCCGTCTACAATGGCGCCGACGTCTACCTCCTTGACGATCCTTTCAGCGCCGTCGATGCGCATACCGCTGCGACACTGTTCAATgtaagaaatttttcatctcagtttcagaggccactgtcatattctcaggatcattctatttatagatgtgttaccttttcctctgtag-------------
|||||| || ||  | || |||||||||| ||| ||| |||| ||||| || || ||||||||||| || ||||| || || ||||| |  ||||||||||||||||  | |   | | || |||  |  |      || |  ||        ||| |   | || ||| | |  || |     | |              
GATTCAACTAGCTCGTGCAGTCTACAATGACGCTGACATCTATCTCCTCGATGACCCTTTCAGCGCAGTTGATGCTCACACTGCTGCTATTCTGTTCAATgtaagaagctatcacttttagattcttaaact-tcaacacacacttgtctcggttcaaaacacagttgtctaagtttatgaaaagaaattcaactaatagc