Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g08960.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G110983_T02 (Zea mays), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattc-ctttcggttttattttgatccattatacttagttgtcaattatgtct---tgttttgcag
|||||||||||||||| ||  |||||||||| ||||| || ||||||||||| ||||| ||||| ||||| |||||||| ||||||||||| || |||||||| | ||    |       |     ||||   | |||     |||   |||    |||  || | ||  |    ||||  |   | |||| |||
TGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgcagaatccccccgcccccttttccccacttcttagtttgaattgtaatatttgacatcgtctttggatatgcttatttcttttacag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G34170.2 (Glycine max), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtg---ttagacttaagagatatgttttattcctttcggttttatt---ttgatccattatacttagttgtcaattatgtcttgtt-ttgcag----------------------------------------
||||||| || |||||  | |||   || || || || || || || || || ||||| ||||| ||||| |||||||| ||||||||||| || ||||||| || ||   | | | |  | | |  |    | ||  |||   || || |   ||| ||  |  |  ||| ||    ||  ||| |  ||  ||  |                                        
TGATGAGAGACTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGGATCAGCGGTGCCCCCCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtgagttgaattcaaattcgatataggtccaatgttgttttaatttatagtcaattggtcactattttttaatttcttatgttgtttaattactgatggataagtgatttttggtttcttgactgctttggattgcag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA18G16160.3 (Glycine max), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagat-atgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag--------------------------------------
 |||||||||||| ||| || ||   || |||||||| |||||||| |||||||| || || ||||| ||||| ||||||||||||||||| || |||||||  |  |    |  |||   || |  ||||  |  | |    | | | ||  ||  |  |   | ||| |  || || |   || |   |                                       
-GATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGGtgtgtaggagtatataaatcatgaaatttttgttttcttaagtgtgtgtttctctttactttgtggttttggatgatttaaggtatgataacaatctaattgtgcttttcttggttctttttttccaga

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G40860.1 (Glycine max), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagata-tgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag----------------------------------------
||||||||||||| ||| || ||   || |||||||| |||||||| |||||||| || || ||||| ||||| ||||||||||||||||| || |||||||   ||||  || || | | ||  ||| || ||  |||   |     | || | |  | ||||| || ||     |||  ||  | |  ||                                        
TGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgt---gtgtaggagtttacaaatcctgtattttttgttttcttaagtgtgtgtttctctttactttgtggttgtggatggtttaatgtatagtaacaatctaattgtgccttttcttggtgcttttttccag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G05080.1 (Glycine max), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagag---atatgttttattcctttcggttttattttga-tccattatacttagttgtc-aattatg----tcttgttttgcag-
| ||||| ||||||||| || ||   |  |||||||| |||||||| |||||||| || || ||||| ||||| |||||||||||||| || || |||||||| | |  || ||| ||||    | |  |  ||    ||    |||  ||  |  |   ||    || || ||| |||||||    ||||||||| |   
TCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagtaaactgaagaatttacaaatcctaagatttcttttttccttaggggtttgttcccttttgtggtctaattatgcttttcttgtttttctag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G02400.2 (Glycine max), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag-
| ||||| ||||||||| || ||   |  |||||||| |||||||| ||||| || || || ||||| ||||| |||||||||||||| || || || ||||| | |  || ||  ||||      |||  ||||||  || ||| ||    |   |  |   || || |   || | | ||||||| |   
TCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGTGCTCCTCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTCGGgtatgttagtataccgaagaa----ttttctttccttaagggtttgttcccttttgtggt--ctaattttgctttttttgttgtttttctag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA18G16160.1 (Glycine max), 5'ss of exon 3
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagat-atgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag-------------------------------------
||||||||||||| ||| || ||   || |||||||| |||||||| |||||||| || || ||||| ||||| ||||||||||||||||| || |||||||  |  |    |  |||   || |  ||||  |  | |    | | | ||  ||  |  |   | ||| |  || || |   || |   |                                      
TGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCTGTTATCTTTGGgtgtgtaggagtatataaatcatgaaatttttgttttcttaagtgtgtgtttctctttactttgtggttttggatgatttaaggtatgataacaatctaattgtgcttttcttggttctttttttccag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G14400.2 (Arabidopsis thaliana), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttaga----cttaagagatatgttttattcctttcggttttattttgatccatta--tacttagttgtcaattatgtcttgttttgcag
| ||||||||||||||  |  ||  ||| || || || || || || ||||| || |||||||||||||| || ||||| ||||||||||| || ||||||||| | |    |    ||| ||| |   | |  ||   | |     || | |   | |  ||  |||||||   |   || | |||   |||| ||
TAATGAGGGATTTCAAGAGGTTGCAGCAAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACATTATGCTCTGGAATGCTGTCATATTTGGgtaatgggaacaagtacctttagatactggctaaatatttctgaaacttttgtcatttctgtacttacttagaccttt-ttgtttctaaatttgtag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv14s0108g00140.t01 (Vitis vinifera), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag------------------------------------------------
||||||||||||||||  | ||   ||| |||||||| ||||| || |||||||| || || ||||||||||||||||| |||||||| || || ||||||||    ||| |     |  |||||| |  ||   |||   | | || |   |   ||  | |    | | |  | ||| ||  |    ||                                                
TGATGAGGGATTTCAAGAGGCTTCAGCAAGATCCTCCTGCTGGTATCAGTGGGGCACCCCATGACAACAATATAATGCTGTGGAATGCAGTTATATTTGGgta---cgttggg----aatgatatgctccatcattttaaatctaatctc--tgtgtttcattagagttttatatctgtatttatgcatagagagacttatttaagtttaacttattcaattcttggttttcactgcag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv08s0032g00310.t01 (Vitis vinifera), 5'ss of exon 1
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatg-----tcttgttttgcag------------------------------
||||||||||||||||  | ||   ||| ||||| || |||||||| |||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||   | ||    |       | | | || ||    | |||||| |      ||||| |  |||        || ||     |||  || ||                                 
TGATGAGGGATTTCAAGAGGCTCCAGCAAGATCCACCTGCTGGCATCAGTGGGGCTCCTCAGGACAACAACATCATGCTATGGAATGCTGTCATTTTTGGgtatt-tctttctttctctctttctttctttttttgattggttttttgccttaccattttgtttatcaacttgttttgataattctaattctgggtttttggtgttttttcttgtttgatttgtag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaa--ggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag------------------------------------------------
||||||| ||||| ||  |  ||   ||||| || || || ||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||||  ||    | | || |   | |  | |||||   || | || | || ||      | || ||   | | | ||      | | ||  ||                                                
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaac-tgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaa-ggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagt---tgtcaattatgtcttgttttgcag-----
||||| | || ||||| ||  ||   || |||||||| || ||||| || || || || |||||||||||||| ||||| ||||||||||| || || |||||| |  ||    |    |     | |||| |||  ||  ||    |  || | |   || |   |    ||  |        | |   ||  |     
TGATGCGTGACTTCAAGCGCTTGCAACATGATCCTCCGGCCGGCATCAGCGGCGCTCCGCAGGACAACAATATCATGCTGTGGAATGCTGTGATATTCGGgtaacgaagtgcctccctggtttcgttttttgttcaattgtgtccggtcgtggtgcggaattcgccgggcgtgggaggcgcacgtcggagtgtcggtttt

upper sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 1
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag
||||| | |||||||| || ||   ||| |||||||| || ||||| || || || ||||||||||||||||| ||| | ||||||||||| || || |||| || |      ||   || |  | | |||    ||| |  | |   ||  | | ||| |                              
TGATGCGAGATTTCAAGCGCCTACAGCATGATCCTCCGGCAGGCATCAGCGGCGCTCCACAGGACAACAATATCATGTTGTGGAATGCTGTGATCTTCGGgtgagtt------ctcgcgaaacctttcttagggtttttgaatgtcggttctttc-ttacag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596611|gb|CI286524.1|CI286524
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|427642|gb|D23775.1|D23775
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|38481076|gb|CF965165.1|CF965165
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88582246|gb|CI699641.1|CI699641
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88317559|gb|CI672136.1|CI672136
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88852170|gb|CI683688.1|CI683688
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88349648|gb|CI632783.1|CI632783
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAGGTACGTTCAA
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAGGTACGTTCAA
EST: gi|2311824|gb|C27979.1|C27979
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88719734|gb|CI743244.1|CI743244
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTGGG                         CCCTGATGATACTCCT
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCT
EST: gi|88851711|gb|CI674913.1|CI674913
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|699844|gb|D46135.1|D46135
EST:     GGGGCCC-ACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         GCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88327706|gb|CI657746.1|CI657746
EST:     GGGCCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGCCCC-ACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88401271|gb|CI685267.1|CI685267
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88739102|gb|CI762610.1|CI762610
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88577108|gb|CI673663.1|CI673663
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88391188|gb|CI595442.1|CI595442
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88306809|gb|CI671972.1|CI671972
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88587359|gb|CI705099.1|CI705099
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTGGG                         CCCTGATGATACTCCTTGGGATGGAGG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAGG
EST: gi|88727218|gb|CI750873.1|CI750873
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|33661335|gb|CF292302.1|CF292302
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|86849628|gb|CI299773.1|CI299773
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCC
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCC
EST: gi|88665600|gb|CI715756.1|CI715756
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTCGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88674537|gb|CI728650.1|CI728650
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88587242|gb|CI704978.1|CI704978
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCC
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCC
EST: gi|88904831|gb|CI712130.1|CI712130
EST:     GGGGCCCCACAGGACAACAATATAATGCTTNGGAATGCTGTAATCTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88727954|gb|CI751316.1|CI751316
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88386921|gb|CI629248.1|CI629248
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88349310|gb|CI678287.1|CI678287
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88726866|gb|CI750521.1|CI750521
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAGGTAC
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAGGTAC
EST: gi|88425673|gb|CI689322.1|CI689322
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88427316|gb|CI569354.1|CI569354
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|1632399|gb|C20128.1|C20128
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88333725|gb|CI643757.1|CI643757
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88387981|gb|CI590257.1|CI590257
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88305368|gb|CI630530.1|CI630530
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88739809|gb|CI761319.1|CI761319
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATAC
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATAC
EST: gi|88429053|gb|CI689932.1|CI689932
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCC-TGATGATACTCCTTGGGATGGAG
EST: gi|88740648|gb|CI764156.1|CI764156
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG
EST: gi|88313212|gb|CI594842.1|CI594842
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGG
EST: gi|88763004|gb|CI772560.1|CI772560
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTC
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTC
EST: gi|88410668|gb|CI687005.1|CI687005
EST:     GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGG                         CCCTGATGATACTCCTTGGGATGGAG
genomic: GGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgtt ... tgttttgcagCCCTGATGATACTCCTTGGGATGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG