1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAAACTGTGACCTTCTATAGGTCCAATACATTTGCAGTAGACGTTGTGAGTGTCGATGCAGATGATTTGCAAATGGCTAAAAAAATCAGCTCCTATACAgtaagcaacattgcaaactttcgccagtattcaaacctgatgttatttgtggttcttaactggttcaacagttgctgatttgctatgctgtgattgaccgtatgcag
species | Oryza sativa |
transcript | LOC_Os05g08840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGTCGATGCAGATGATTTGCAAATGGCTNNNNNNNTCAGCTCCTATACA ATTGGCCCTTTCCAATCCAGCAAACCTGAGAAGGCAAAAGTGAATGTGAAAEST: gi|29672139|gb|CB668414.1|CB668414
genomic: GTGTCGATGCAGATGATTTGCAAATGGCTAAAAAAATCAGCTCCTATACAgtaagcaaca ... ccgtatgcagATTGGCCCTTTCCAATCCAGCAAACCTGAGAAGGCAAAAGTGAATGTGAAA
EST: GTGTCGATGCAGATGATTTGCAAATGGCTNNNNNNNTCAGCTCCTATACA ATTGGCCCTTTCCAATCCAGCAAACCTGAGAAGGCAAAAGTGAATGTGAAAEST: gi|58684854|gb|CK073541.1|CK073541
genomic: GTGTCGATGCAGATGATTTGCAAATGGCTAAAAAAATCAGCTCCTATACAgtaagcaaca ... ccgtatgcagATTGGCCCTTTCCAATCCAGCAAACCTGAGAAGGCAAAAGTGAATGTGAAA
EST: GTGTTGATGCAGATGATTTGCAAATGGCTAAAAAAGTCAGCTCCTATACA ATTGGCCCTTTCCAATCCAGCAATCCTGAGAAGGCAAAAGTGAATGTGAAA
genomic: GTGTCGATGCAGATGATTTGCAAATGGCTAAAAAAATCAGCTCCTATACAgtaagcaaca ... ccgtatgcagATTGGCCCTTTCCAATCCAGCAAACCTGAGAAGGCAAAAGTGAATGTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACTGTGACCTTCTATAGGTCCAATACATTTGCAGTAGACGTTGTGAGTGTCGATGCAGATGATTTGCAAATGGCTAAAAAAATCAGCTCCTATACAgtaagcaacattgcaaactttcgccagtattcaaacctgatgttatttgtggttcttaactggttcaacagttgctgatttgctatgctgtgattgaccgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC