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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACATTTTGCTCAGTGCTGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttccaaaaccataattgatatttagcggttcatcatggctgttcaatttaccacatatattgatttgtgatgtttcttttatttatgttcatttgttcag

Basic information

species Oryza sativa
transcript LOC_Os05g07690.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596706|gb|CK007234.1|CK007234
EST:     TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
genomic: TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
EST: gi|89199020|gb|CI253094.1|CI253094
EST:     AGGTTGTGTGGGCCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGT
genomic: AGGTTGTGTGGG-CAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGT
EST: gi|58683882|gb|CK072569.1|CK072569
EST:     TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
genomic: TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
EST: gi|86596652|gb|CI286565.1|CI286565
EST:     TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG                         GGACGACGACATATCGACGAAGACAAGCTTGATTTCAACAGGTGGAAATGT
genomic: TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAA-AGGTGGAAATGT
EST: gi|88321921|gb|CI673069.1|CI673069
EST:     GGTTGTGTGGGCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
genomic: GGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
EST: gi|38480845|gb|CF964934.1|CF964934
EST:     TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
genomic: TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
EST: gi|33814147|gb|CF332955.1|CF332955
EST:     TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAG                         GGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT
genomic: TGTGCTAGCTTTGTTGGCTCAAGTTCACAATGGGAGGTTGTGTGGGCAAGgtgagtcttc ... atttgttcagGGACGACGACATATTGAGGAAGACAAGCTTGATTTCAAAGGTGGAAATGTT