Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGgtataagaatggtagtagacaggaagaacataccaaggagagattttccattggttgtgtatatagtttgttcactaacctcacatagtcacattagtgg...

Basic information

species Oryza sativa
transcript LOC_Os05g06760.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G177026_T01 (Zea mays), 5'ss of exon 2
GTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGgtataagaa----tggtagtagacaggaagaacataccaaggagagattttccattggttgtgtatatagtttgttcactaacctcacatagtcacattagtgg
 ||||||||  ||||| | ||| |||||||||| ||||||||||| |||||||| |||||| |  ||||| | || ||||| |||||||| || ||||||||||||||     ||| |||   ||       | |      | ||  ||||   |  ||      | || | |        |  ||   ||     || |    
ATGGGAGGACATGCGGTTGAAGAGGATCCTGGTCGATTACATGCTTCGGATGTCCTACTACAATTCCGCCACCAAGCTCGCTGAGACTTCTGGTATTCAGgtataagatgggctggcagtttgcatttttttcttgtttctgtgatgttttatctctgtcaacgttgtaatgttgatgtagaaatctggtatcagtatga----

upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA20G38660.1 (Glycine max), 5'ss of exon 2
GTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGgtataaga-atggtagtag-acaggaagaacataccaaggagagatt--ttccattggttgt---gtat-atagtttg---ttcac---taacctcacatagtcac-attagtgg-----------------------
 ||| |  |    ||  | |||||||| || |||||||||||| || ||||||||||||| ||||| || | ||| || ||  | |    |  | | ||||||    |  |||| || | |  | | |   || |     | |  ||  | |  |||||| |   || | ||||||||   | | |   |    ||| || |   | |  | |                         
ATGGAATAACACTCGCATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCAAAAGCAGCAACTTGCAGgtaaggaatgtggtggttgtattgtatgtggatgctggcaatattttgctccttttggtttttctgtgttatagtttgaaatgcgcattttgtttcatattgcttctaacaataatatcatttgtgctggtgcatcag

upper sequence: LOC_Os05g06760.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA10G43910.1 (Glycine max), 5'ss of exon 2
GTGGGAGGAATTGCGGCTCAAGCGGATCCTGGTTGATTACATGCTGCGGATGTCATACTACGACACCGCCGCGAATCTCGCGGAGACTTCCGGCATTCAGgtataagaatggtagtagacaggaagaacat--accaaggagagattttccattggttgtgtatatagtttgttcactaacctcacatagtcacattagtgg--------------------------------------
 ||| |  |    ||  | |||||||| || |||||||||||| || ||||||||||||| ||||| || | ||| || || || |    |  | | |||||| | | ||| | || |   ||  | |  |  |    ||  | ||||| ||    |||  | |   || |  |   |          | |    || ||                                        
ATGGAATAACACTCGTATGAAGCGGATTCTTGTTGATTACATGTTGAGGATGTCATACTATGACACTGCAGTGAAACTTGCCGAAAGCAGCAACTTGCAGgta-agggatg-tggtggggtggttgtatgtggatgctggcaatattttgcaccttttggtttttctgtgttatagtttgaaatgtgcattttgttttgtattccttctaacaataatatcattcatgttgttgcatcag