1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGAGGAAGGGGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAATCACATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaaacaagtcttctgcatttcctcgtttataccagcttccgattcttctcttatctcttctccaacaattctactccctgaattggtccaaaattctaaatttcttcctggtgaattgttgcag
species | Oryza sativa |
transcript | LOC_Os05g04820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|58666768|gb|CK055454.1|CK055454
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|33653484|gb|CF276098.1|CF276098
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: TAACCAAGCATGGCCATGGCNTGCTGGAAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|88405488|gb|CI588694.1|CI588694
genomic: TAACCAAGCATGGCCATGGC-TGCTGGA-GTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTAEST: gi|58610479|gb|CK038191.1|CK038191
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGAEST: gi|7274003|gb|AU083547.1|AU083547
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGT-CCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|29660292|gb|CB656567.1|CB656567
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|58605277|gb|CK033310.1|CK033310
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|87005467|gb|CI285689.1|CI285689
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|117245058|gb|CT843321.1|CT843321
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGGTGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGAEST: gi|58665920|gb|CK054606.1|CK054606
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
EST: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAG GGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
genomic: CATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaa ... attgttgcagGGCTCCAAAGATGCGGCAAGAGCTGCAGGCTGAGGTGGATAAACTATCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGGAAGGGGCTCTGGTCCCCTGAGGAGGATGAGAAGCTCATGAATCACATAACCAAGCATGGCCATGGCTGCTGGAGTTCTGTTCCTAAACTTGCAGgtgagctcaaacaagtcttctgcatttcctcgtttataccagcttccgattcttctcttatctcttctccaacaattctactccctgaattggtccaaaattctaaatttcttcctggtgaattgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA