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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTGATTGGCCTCGGCTCACCGCCGCAGAACTTCACGGTGATATTTGACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcctgtgttgcggattgatctatgtggttttgttttttaacatgaatgcactgtgtccacactactttctatgggactttgatgtctgatgtgaatgcactgcactgcag

Basic information

species Oryza sativa
transcript LOC_Os05g04630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g04630.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G123029_T05 (Zea mays), 5'ss of exon 2
TGGGGTGATTGGCCTCGGCTCACCGCCGCAGAACTTCACGGTGATATTTGACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgag------ttcctgtgttgcggattgatctatgtggtttt---gttttttaacatgaatgcactgtgtccacactactttctatgggact--ttgatgtctgatgtgaatgcactgcac---tgcag
 |||||  | ||| ||||| | ||||||||||||||||| || || || ||||| || ||||||||||| ||||| || ||  | | |||||| || |||||  |      |||||   ||||    |  ||  | |   | |   | | | |  |  |     |||    |  |||| ||| |  ||    |  ||  ||| |  | ||   | ||||| |   |||||
CGGGGTCGTCGGCATCGGCACGCCGCCGCAGAACTTCACCGTCATCTTCGACACCGGCAGCTCCAACCTCTGGGTCCCCTCCTCCAGATGCTACTTCTCGgtccggttcccttccttccttgcttgcttttccttctctctctctggctctctgcctggcgcttactagtccttcactccttccactgaatttatttattgtatattttgttcg-actgcgcgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631562|gb|CB636571.1|CB636571
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29676557|gb|CB672832.1|CB672832
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAACAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58695107|gb|CK083794.1|CK083794
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88385710|gb|CI566572.1|CI566572
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCAGAGCAGATACCACTCGA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGA
EST: gi|58662934|gb|CK051620.1|CK051620
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29615431|gb|CB620443.1|CB620443
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29678514|gb|CB674789.1|CB674789
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88298738|gb|CI565935.1|CI565935
EST:     ACACTGGAAGCTCCAAGCTGTGGGTTC-TTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCAGAGCAGATACAAGTCGAAAA-GTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33677805|gb|CF306044.1|CF306044
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29634261|gb|CB639270.1|CB639270
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58661163|gb|CK049843.1|CK049843
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCAC
EST: gi|29680077|gb|CB676352.1|CB676352
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|117234267|gb|CT842364.1|CT842364
EST:     ACACTGGAAGCTCCAACCTGTGAGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|426282|gb|D22144.1|D22144
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33683171|gb|CF311410.1|CF311410
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29676212|gb|CB672487.1|CB672487
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|4714998|gb|AU056115.1|AU056115
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88350354|gb|CI623292.1|CI623292
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAA
EST: gi|33655682|gb|CF278296.1|CF278296
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58593759|gb|CF992067.1|CF992067
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCCAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58588210|gb|CF986518.1|CF986518
EST:     GCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTAGCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: GCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58672443|gb|CK061129.1|CK061129
EST:     CCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: CCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33676712|gb|CF304951.1|CF304951
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58689178|gb|CK077865.1|CK077865
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88344894|gb|CI625740.1|CI625740
EST:     ACACTGGAAGCTCCAAC-TGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTAC
EST: gi|58660269|gb|CK048949.1|CK048949
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58695208|gb|CK083895.1|CK083895
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29678428|gb|CB674703.1|CB674703
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29636076|gb|CB641085.1|CB641085
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58692954|gb|CK081641.1|CK081641
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58694420|gb|CK083107.1|CK083107
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29638564|gb|CB643573.1|CB643573
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88299000|gb|CI568003.1|CI568003
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCA
EST: gi|58606761|gb|CK034794.1|CK034794
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29676404|gb|CB672679.1|CB672679
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33654351|gb|CF276965.1|CF276965
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|27577353|gb|CB000048.1|CB000048
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88395826|gb|CI593028.1|CI593028
EST:     ACACTGGAAGCTCCAAACTGTGGGTTC-TTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAAC
EST: gi|33670080|gb|CF298319.1|CF298319
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29680749|gb|CB677024.1|CB677024
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|25799139|gb|CA755100.1|CA755100
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29619013|gb|CB624025.1|CB624025
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88425206|gb|CI564723.1|CI564723
EST:     ACACTGGGAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCAACAGAAGATACAAATCGAA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAA
EST: gi|88360265|gb|CI611984.1|CI611984
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACC
EST: gi|29646767|gb|CB651774.1|CB651774
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88421889|gb|CI609767.1|CI609767
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTAC
EST: gi|88357474|gb|CI623528.1|CI623528
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTA
EST: gi|88423863|gb|CI609894.1|CI609894
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGAAGATAAAACTC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTC
EST: gi|33654754|gb|CF277368.1|CF277368
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88428546|gb|CI565014.1|CI565014
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGGAGATA-AACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58608482|gb|CK036515.1|CK036515
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58689258|gb|CK077945.1|CK077945
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58612283|gb|CK039995.1|CK039995
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29615278|gb|CB620290.1|CB620290
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|84117024|gb|CD150791.1|CD150791
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58693366|gb|CK082053.1|CK082053
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29667624|gb|CB663899.1|CB663899
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29632395|gb|CB637404.1|CB637404
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58687763|gb|CK076450.1|CK076450
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58608866|gb|CK036899.1|CK036899
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88451442|gb|CI565495.1|CI565495
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATA-AACCTCGAAAAAGTCGAGCTCTTA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAAC-TCGAAAAAGTCGAGCTCTTA
EST: gi|33795126|gb|CF323436.1|CF323436
EST:     ACACTGGAAGCTCCA-CCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTT-C
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29645305|gb|CB650312.1|CB650312
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88367370|gb|CI566336.1|CI566336
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACA-CTCGAAAA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAA
EST: gi|29635393|gb|CB640402.1|CB640402
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29616093|gb|CB621105.1|CB621105
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58690622|gb|CK079309.1|CK079309
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29634391|gb|CB639400.1|CB639400
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29638609|gb|CB643618.1|CB643618
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58692931|gb|CK081618.1|CK081618
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|2312447|gb|C28602.1|C28602
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33684656|gb|CF312895.1|CF312895
EST:     ACACTGGAAGCTCCAACCTGTGGGTCCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29642216|gb|CB647223.1|CB647223
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|27577332|gb|CB000027.1|CB000027
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58591597|gb|CF989905.1|CF989905
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33666702|gb|CF297669.1|CF297669
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|58691118|gb|CK079805.1|CK079805
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29675833|gb|CB672108.1|CB672108
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29643726|gb|CB648733.1|CB648733
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|29616174|gb|CB621186.1|CB621186
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|86596757|gb|CI286670.1|CI286670
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|33655718|gb|CF278332.1|CF278332
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAAAAAGTCGAGCTCTTAC
EST: gi|88411247|gb|CI564368.1|CI564368
EST:     ACACTGGAAGCTCCAACCTGTGGGTTCCTTCACCAAAATGCTATTTTTCG                         ATAGCATGCTACCTCCA
genomic: ACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCA
EST: gi|88402940|gb|CI568714.1|CI568714
EST:     ACCTGGAAGCCTCCACCCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCG                         ATAGCATGCTAGCTCCACAGCAGATACAACTCGAA
genomic: AC-TGGAAGC-TCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcct ... tgcactgcagATAGCATGCTACCTCCACAGCAGATACAACTCGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGGTGATTGGCCTCGGCTCACCGCCGCAGAACTTCACGGTGATATTTGACACTGGAAGCTCCAACCTGTGGGTTCCTTCAGCAAAATGCTATTTTTCGgtgagttcctgtgttgcggattgatctatgtggttttgttttttaacatgaatgcactgtgtccacactactttctatgggactttgatgtctgatgtgaatgcactgcactgcag

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