1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgctcgatcaaccaccatcctaccttcctccaatctccattgcatccttaatttcaattcacgacagatttttgctatacgacactagtccctt...
species | Oryza sativa |
transcript | LOC_Os05g03610.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAG GACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAEST: gi|58611826|gb|CK039538.1|CK039538
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGA
EST: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAG GACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAEST: gi|88298636|gb|CI563631.1|CI563631
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGA
EST: GACCTCTGGCCCAACGCTGC-AAGGACGCCGTCGAGGTCCTCCACGGCAG GGACGCTGACATCGCCAGTGGGTCTGATGAAAATGCCTTTGAGGCCATCAAEST: gi|29645313|gb|CB650320.1|CB650320
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagG-ACGCTGACATCGCCAGTGGGTCTGATGAAA-TGCCTT-GAGGCCATCA-
EST: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAG GACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGAEST: gi|29623942|gb|CB628953.1|CB628953
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGA
EST: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAG GACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGAEST: gi|29614363|gb|CB619376.1|CB619376
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGA
EST: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAG GACGCTGACATCGCCGGTGGGTCTGATGAAGTGCCTTGAGGCCATCAGGGA
genomic: GACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgct ... gctcccgcagGACGCTGACATCGCCAGTGGGTCTGATGAAATGCCTTGAGGCCATCAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGCCCATCGTGAAGGCCCTCCACGACGGCGTCCGTGTCATCGAGCTCGACCTCTGGCCCAACGCTGCCAAGGACGCCGTCGAGGTCCTCCACGGCAGgtgatccgctcgatcaaccaccatcctaccttcctccaatctccattgcatccttaatttcaattcacgacagatttttgctatacgacactagtccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc