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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag

Basic information

species Oryza sativa
transcript LOC_Os05g01600.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T11 (Zea mays), 5'ss of exon 1
---------------------------CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
                           |  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |      |   |   ||| ||                      | | | || |  |||||  || || ||||  | |  || | |||
ATGATTCTATCCATATGCCACTTGCAGCAGTTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgac--------------------aacctttacttccaaatatgccacta-attatgtct-gtcttttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G104017_T03 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacatta-cattacatttc-atcatgtag
|  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    |  |||||   || | |  |||     |  ||    |||  | ||  |  |||||  || ||   ||   | || ||| | |||
CAGTTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag----tgcttttccccttaatttgtaca----gccata---gtctcccccacccaaatatgccactaattttgtgtatctatcttctag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G104017_T01 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacatta-cattacatttc-atcatgtag
            |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    |  |||||   || | |  |||     |  ||    |||  | ||  |  |||||  || ||   ||   | || ||| | |||
------------AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag----tgcttttccccttaatttgtaca----gccata---gtctcccccacccaaatatgccactaattttgtgtatctatcttctag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt---ctttttctt-------ttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattac--attacatttcatcatgtag
   |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    |   |  |  |||        |||| |   |  || ||  |   ||   ||||     | |   |    || |     ||  | || || |   
---TTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcagccccttggccctgacttgtacaacctttatttccaaata-tgccactaattatgtctgtcctttaggctggttttgctggggacgatgcaccaagg--

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T09 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
            |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |      |   |   ||| ||                      | | | || |  |||||  || || ||||  | |  || | |||
------------AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgac--------------------aacctttacttccaaatatgccacta-attatgtct-gtcttttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T02 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
|  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |           |   ||  | || ||         ||||   | | |  | |  |||||  || || ||||  | |  || | |||
CAGTTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag-----------ccccttggccctgac--------ttgtacaacctttatttccaaatatgccacta-attatgtct-gtcctttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G110378_T01 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacat-tacatttca-tcatgtag
            |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |     |  |  |   |   | |  || | || |     |  |  | |||   |         ||||  | ||| ||  | || | |||
------------AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcag-ccccccctcccccctgacccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactcttctag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T12 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
   |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |      |   |   ||| ||                      | | | || |  |||||  || || ||||  | |  || | |||
---TTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgac--------------------aacctttacttccaaatatgccacta-attatgtct-gtcttttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G104017_T04 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacatta-cattacatttc-atcatgtag
   |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |    |  |||||   || | |  |||     |  ||    |||  | ||  |  |||||  || ||   ||   | || ||| | |||
---TTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag----tgcttttccccttaatttgtaca----gccata---gtctcccccacccaaatatgccactaattttgtgtatctatcttctag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T08 (Zea mays), 5'ss of exon 1
---------------------------CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
                           |  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |           |   ||  | || ||         ||||   | | |  | |  |||||  || || ||||  | |  || | |||
TTGATTTTATCCACATGCCACTTGCAGCAGTTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag-----------ccccttggccctgac--------ttgtacaacctttatttccaaatatgccacta-attatgtct-gtcctttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 5'ss of exon 3
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacat-tacatttca-tcatgtag
   |||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |     |  |  |   |   | |  || | || |     |  |  | |||   |         ||||  | ||| ||  | || | |||
---TTCTTTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcag-ccccccctcccccctgacccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactcttctag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
|  |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |      |   |   ||| ||                      | | | || |  |||||  || || ||||  | |  || | |||
CAGTTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAGgtcagcccccgtccctgactttgac--------------------aacctttacttccaaatatgccacta-attatgtct-gtcttttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G067985_T04 (Zea mays), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
   |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |           |   ||  | || ||         ||||   | | |  | |  |||||  || || ||||  | |  || | |||
---TTCTGTAG-AAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAGgtcag-----------ccccttggccctgac--------ttgtacaacctttatttccaaatatgccacta-attatgtct-gtcctttag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtat--gtc---gtctc-ctgctgaatattacattacattacatttcatcatgtag
   ||  |||  | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| ||||| |  |  | |     || ||   |  |  |||||   || |||  |||   || ||  |    ||   |  ||| |  ||    ||    |  ||
TAGTTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-tagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttac-------tcttacgtaatgtaa------tgtatgtcgtct-cctgctgaatatta--cattacattacatttcatcatgtag--------------------
      | ||  | |||||||| | ||||||||| || ||||||||   ||| ||||| |||||||||||||||||  ||   | |||| |   || |        ||||  |  ||  ||      |||      | | | |||| | ||||     ||| ||   || |    || ||                     
----GTTTTAAAAGATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 1
--------------------------CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag---
                          |   | ||||  | ||||| || | |||||| || || || ||||| ||||||||||| |||||||||||||||||  |   ||       || |||  | || | |    |  || || |  |  |||   |   || ||   |  ||  |||| |  ||| |    
TATTTCATGGCACCCTATGCTTTTTGCAGGTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtat--gtc---gtctc-ctgctgaatattacattacattacatttcatcatgtag
   ||  |||  | |||||||| | |||||| || || || ||||||||||||||||| ||||||||||| ||||| |  |  | |     || ||   |  |  |||||   || |||  |||   || ||  |    ||   |  ||| |  ||    ||    |  ||
---TTTGGTAAAAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt-tagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctg-attttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcc--tgctgaatattacattacattacatttcatcatgtag
   ||  |||  |||||||||| | |||||| || || || ||||| ||||||||||| ||||||||||| |||||  | | |||    ||  || ||| | | |    || || |   | | |  | |  |  ||   | |  |||  | |     ||    |  ||
---TTTGGTAAAAAATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttgttagtgtaattgcatctatttagtcttggtttcattattgctcaatttatttaaatgatcatctgtgtacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G32220.2 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag---
    | ||||  | ||||| || | |||||| || || || ||||| ||||||||||| |||||||||||||||||  |   ||       || |||  | || | |    |  || || |  |  |||   |   || ||   |  ||  |||| |  ||| |    
---GTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttctttttta--------ctcttacg-taatgtaatgtatg--tcgtctcctgct-----gaatattacattacattacatttcatcatgtag--------
      | ||  |||||||||| | ||||||||| || ||||||||   ||| ||||| |||||||||||||||||  ||   | |||||     ||          ||||  | || || | |  |    |||     ||||      ||||| | ||||   || ||||  ||    |         
----GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaacatgttttttccaattgatgagtgcttcttgtgctattgaagtagacagttcgctctgtgcttgcttaaatatgatattaatatatattttttctccaatgtttgcag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacg-taatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag
       ||||   ||||| || | ||| ||||| || ||| |||||||||||||||| ||||||||||| |||||  |       | |||||| ||||| | | | |  | | |  | || |      || |  |  || | ||                     
----ATCGTAGACCATGGCCGATGCTGATGACATTCAACCTATTGTCTGTGACAATGGTACTGGAATGGTTAAGgttag-----tctcttctttcttactttaaggattctcttaattttggcaagatttgatacaagttcctttgtgcag---------------

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatg-taatgtatgtcgtct--cctgctgaatattacattacattacatttcatcatgtag--
        |   ||||||| || |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||  || ||    | | | |||   |  |   |  |  |||  |   | ||    | ||   || | |||    ||| |  |||    ||  |   
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--gagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 3
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttt--tactcttacgtaatgtaatgtatgtcgtctcc----tgctgaatattacattacattacatttcatcatgtag------
    |    |    ||||| ||   ||| || |||||||| || |||||||||||||| ||||||||||| |||||||| | ||  |||  |  ||  ||  |  |  |  |||  ||| ||  |   |     |||| ||| | |     | || ||| | ||  | ||       
---GTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGgtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcag

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 1
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatat-tacattacattac--atttcatcatgtag---------
      | ||| | ||||| || |  ||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||  |   || ||||| |||| |   | |   |   |||| ||| |||| |   ||  ||  || |   | |||   |||| |  |  |           
--AGGTTTTAGAAGATGGCCGATGCCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgtttg--tcagttattcttatttatttcaatgagttcatatgtttgt-gtctgcacttgtttagataaagggctttagggattttacaaaatgaatttgactc

upper sequence: LOC_Os05g01600.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 3
CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatt-ttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtag--------
 ||     || ||||||||||||||||||||  | |||||  | || || |||||||| |||||||||||||||||  | |   |||| |            |||  |  |   |  |  ||    |       |  |||  || |  ||    |||  |    |         
GTCGGTATTAAGAAATGGCTGACGGTGAGGAAGTACAGCCCTTGGTGTGCGACAATGGAACTGGAATGGTCAAGgtgaggtcactcttctaaaacccagagattaacttttccgaacttggttcattggattcaaggattctataatcttgagcttctgctgaaaaatattcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598459|gb|CK008987.1|CK008987
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTGTTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58599040|gb|CK009568.1|CK009568
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTA
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58673476|gb|CK062162.1|CK062162
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58686331|gb|CK075018.1|CK075018
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58676615|gb|CK065302.1|CK065302
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58684497|gb|CK073184.1|CK073184
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|3759155|gb|C96854.1|C96854
EST:     GTGAGGACATCCAGCCTCTTGTCTGTNACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88402070|gb|CI593782.1|CI593782
EST:     TGAGTGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTTG
genomic: TGAG-GACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGC-TGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTA-TTG
EST: gi|66915537|gb|CX102385.1|CX102385
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|29655669|gb|CB651944.1|CB651944
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88370787|gb|CI592553.1|CI592553
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58655965|gb|CK044645.1|CK044645
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGAGGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58682619|gb|CK071306.1|CK071306
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58670222|gb|CK058908.1|CK058908
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|29640111|gb|CB645120.1|CB645120
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58676432|gb|CK065119.1|CK065119
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58652810|gb|CK041490.1|CK041490
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCT
EST: gi|58598515|gb|CK009043.1|CK009043
EST:     GCACTGGAATGGTCAA-                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58595519|gb|CK006047.1|CK006047
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58682347|gb|CK071034.1|CK071034
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58597880|gb|CK008408.1|CK008408
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88351028|gb|CI620688.1|CI620688
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58680557|gb|CK069244.1|CK069244
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 64 (downstream exon)
Score: 31

CTCTTCTGTAGGAAATGGCTGACGGTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG




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