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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCCAGATTCCATTTTCAGGGATAAGACAGTAGCTGAGCTGGGATGTGGCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAGgttggcatctctttcctgtgtacatttttaattcattgctactgtacagaggtgggagctacagcacttagacatttactaagtcacaagatatgagttt...

Basic information

species Oryza sativa
transcript LOC_Os05g01470.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01470.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G098039_T01 (Zea mays), 5'ss of exon 2
GCATCCAGATTCCATTTTCAGGGATAAGACAGTAGCTGAGCTGGGATGTGGCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAGgttggcatctctttcctgtgtacatttttaattcattgctactgtacagaggtgggagctacagcacttagacatttactaagtcacaagatatgagttt---
 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||| |||||| ||||| | | | ||||| |  || ||||||||  |  || |    | |||  |  |      | ||    | ||    |    |   |   | |  ||||  |   
TCATCCAGACTCCATTTTCAGGGATAAGACAGTAGCTGAGCTGGGATGTGGCAACGGTTGGATATCTATTGCTCTTGCAGAGAAGTGGTGCCCTTCAAAGgtcgacctgtcttttcc-tgcacatttttgctgtatagtg--tatactcaattcctcattgcaaacataagctgatctggagcacttcaaacttgagcatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630290|gb|CB635299.1|CB635299
EST:     GCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAG                         GTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAAC
genomic: GCAATGGTTGGATATCCATTGCACTTGCAGAAAAGTGGTCCCCTTCGAAGgttggcatct ... tcttttgaagGTCTATGGACTGGATATAAACCCAAGAGCTGTCAAGATTGCATGGATAAAC