1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTGCTCTCGACATCGAGTACCACCACAACATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGgtaaaccctcttcttttcttctcttctcctattctcccctcattggtgatgatgtaccactatgatattgcttctgtccctgctagtagttagtacaaca...
species | Oryza sativa |
transcript | LOC_Os05g01450.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATG GTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTEST: gi|58598359|gb|CK008887.1|CK008887
genomic: ATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGgtaaaccctc ... ctgtatgcagGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTT
EST: CCACAAGGTCAACCCCTAAGGTAAGTCATTGTTGGATG GTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTTEST: gi|88762252|gb|CI771808.1|CI771808
genomic: CCACAAGGTCAACCCC-AAGG-AAGTCATTGTTGGATGgtaaaccctc ... ctgtatgcagGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTT
EST: ATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATG GTTCTCGACTGGCTTCGGTGTTTEST: gi|117237389|gb|CT861885.1|CT861885
genomic: ATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGgtaaaccctc ... ctgtatgcagGTTCTCGACTGGCTTCGGTGTTT
EST: ATGTATGCGTCGCACCACAGGGTCAACCCCAAGGAAGTCATTGTTGGATG GTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTT
genomic: ATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGgtaaaccctc ... ctgtatgcagGTTCTCGACTGGCTTCGGTGTTTCTGGGGGAAGTACGCTTATCCATGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTCTCGACATCGAGTACCACCACAACATGTATGCGTCGCACCACAAGGTCAACCCCAAGGAAGTCATTGTTGGATGgtaaaccctcttcttttcttctcttctcctattctcccctcattggtgatgatgtaccactatgatattgcttctgtccctgctagtagttagtacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc