Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|218488563|gb|FG963887.1|FG963887EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|58601852|gb|CK012380.1|CK012380EST: CAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAAGCAAGAGGGTG-TGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: CAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|6431609|gb|AU081261.1|AU081261EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAA-CTTCGATGAGATCTTGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|58690506|gb|CK079193.1|CK079193EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCA
EST:
gi|58606356|gb|CK034389.1|CK034389EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTT
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTT
EST:
gi|58659427|gb|CK048107.1|CK048107EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|24468795|gb|CA305744.1|CA305744EST: TTAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|163926984|gb|EG715158.1|EG715158EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGA
EST:
gi|88388344|gb|CI627883.1|CI627883EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|33794240|gb|CF323010.1|CF323010EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|58689902|gb|CK078589.1|CK078589EST: GCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: GCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|44670933|gb|CR284367.1|CR284367EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|33693579|gb|CF321818.1|CF321818EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|6431644|gb|AU081296.1|AU081296EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|426067|gb|D21925.1|D21925EST: TCAGACAACATCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTAGAGGGAAACG
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|58590100|gb|CF988408.1|CF988408EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
EST:
gi|58669900|gb|CK058586.1|CK058586EST: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAG GTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACA
genomic: TCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
73 (upstream exon),
75 (downstream exon)
Score:
118AGACATGATTGCTCTGTCGTTTGTCCGTAAAGGATCAGATTTGGTTACCGTCAGACAACTTCTTGGACAGCATGCAAAGCGCATCAAGCTGATGTCAAAGgtttgtaatc ... ttgtttttagGTTGAAAACCAAGAGGGTGTTGTAAACTTCGATGAGATCTTGAGGGAAACGGATGCATTTATGGTTGCTAGAGGTGATCTTGGAATGGAGATTCCAGTTG
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