1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGCGGAAACGAGGTGGGCCTGGTGGTTTAAATAAAGTTTGTGCAATCTCACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcagctttccccaattgtattagagaaaatggcatccaatttaatcctgtgataaactctttaatgaatcaaccgagacaaagtaacttgcttcctccattcag
species | Oryza sativa |
transcript | LOC_Os04g56980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAGTAATCTTCAAGATCCTEST: gi|58681042|gb|CK069729.1|CK069729
genomic: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
EST: ACCGTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAEST: gi|84117678|gb|CD151445.1|CD151445
genomic: ACC-TGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAA
EST: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCTEST: gi|27576903|gb|CA999597.1|CA999597
genomic: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
EST: CAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCTEST: gi|88693532|gb|CI737107.1|CI737107
genomic: CAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
EST: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCTEST: gi|29660434|gb|CB656709.1|CB656709
genomic: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
EST: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAG ATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
genomic: CACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcag ... ctccattcagATTGTCAAGCAGCTTTGGCAATATATTCGGCAGAATAATCTTCAAGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCGGAAACGAGGTGGGCCTGGTGGTTTAAATAAAGTTTGTGCAATCTCACCTGAACTTCAGACTATTGTTGGTGAGACTGTCATGTCAAGAACTCAGgtaatctcagctttccccaattgtattagagaaaatggcatccaatttaatcctgtgataaactctttaatgaatcaaccgagacaaagtaacttgcttcctccattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC