1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAAGAAGACCAACTTCCTCGACTTCAAGAGGGAGAAAGGCCACCGCGACGCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactcatctctctctccagagtatcaactcgtaccttatcggttggttaaaggattatctgtgtgttctttcgcgttttactgttcatcctgtccatggacatggatttgctgcaaatttgtgattttgtttttgggtggtggcag
species | Oryza sativa |
transcript | LOC_Os04g56670.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|55432100|gb|CV729069.1|CV729069
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|88296234|gb|CI667624.1|CI667624
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|88334857|gb|CI648632.1|CI648632
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: CCATCGTCACGCAGCGCTACCCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|218503821|gb|FG944828.1|FG944828
genomic: CCATCGTCACGCAGCGCTA-CCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|33660819|gb|CF291786.1|CF291786
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|88330642|gb|CI635271.1|CI635271
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|88310111|gb|CI657535.1|CI657535
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCCTCCAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAEST: gi|88309506|gb|CI655874.1|CI655874
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|33693679|gb|CF321918.1|CF321918
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|55413423|gb|CV725799.1|CV725799
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCAEST: gi|88329508|gb|CI648570.1|CI648570
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
EST: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAA GTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
genomic: GCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactc ... gtggtggcagGTACAATGGCATATGCCTGATGGTGCAAAAGCTCGTCAACATTATAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAGACCAACTTCCTCGACTTCAAGAGGGAGAAAGGCCACCGCGACGCCATCGTCACGCAGCGCTACCTCCTCGTCGAGAGAGACGACTACAAGAAgtactaactcatctctctctccagagtatcaactcgtaccttatcggttggttaaaggattatctgtgtgttctttcgcgttttactgttcatcctgtccatggacatggatttgctgcaaatttgtgattttgtttttgggtggtggcag
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