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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcctccgttttatgtagtgattgtgtagtgttggttcagttagtaaccagagtaatttatttcggtttagcaattttgagctgttaatttcgaa...

Basic information

species Oryza sativa
transcript LOC_Os04g56480.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56480.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G044011_T01 (Zea mays), 5'ss of exon 2
CTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcctccgttttatgtagtgattg-tgtagtgttggttcagttagtaacca-gagtaatttatttcggtttagcaattttga--gctgttaatttcgaa
 ||||||||||||||||||||||| ||||||| || |||||||| ||||     || || | ||||||| ||||||| ||  ||||||| | |   || |  ||     ||| |  ||   | || | |||  |  ||| |||  | |  |  | |  |||      ||   | ||| ||   |   
TTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcattttttatgcgtgcaacttggttcagatcttgtgccgtt--tcgccatgaggtactcctcgctgactagtgcccctggtggatgtgaaaagcc--

upper sequence: LOC_Os04g56480.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G044011_T02 (Zea mays), 5'ss of exon 1
-----------------CTGGTGCCGGAGGAGGAGGACGACCTGTGGCATGCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcctccgttttatgtagtgattg-tgtagtgttggttcagttagtaacca-gagtaatttatttcggtttagcaattttga--gctgttaatttcgaa
                  ||||||||||||||||||||||| ||||||| || |||||||| ||||     || || | ||||||| ||||||| ||  ||||||| | |   || |  ||     ||| |  ||   | || | |||  |  ||| |||  | |  |  | |  |||      ||   | ||| ||   |   
ACGGTCGTGCTCCGCAGTTGGTGCCGGAGGAGGAGGACGACTTGTGGCACGCGTACAACCTCATTGCCATTGGTGACAGCCTCCAGGCCGTCACCGTACGgtgagtgcattttttatgcgtgcaacttggttcagatcttgtgccgtt--tcgccatgaggtactcctcgctgactagtgcccctggtggatgtgaaaagcc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659831|gb|CB656106.1|CB656106
EST:     GCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAG                         GAAAGTTCTGAGAGAGATGGCATCTGGAGGACGTGATGCTGAGCGTGTGAG
genomic: GCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcct ... tgattcccagGAAAGTTCTGAGAGAGATGGCATCTGGAGGACGTGATGCTGAGCGTGTGAG
EST: gi|58595078|gb|CF993386.1|CF993386
EST:     GCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAG                         GAAAGTTCTGAGAGAGATGGCATCTGGAGGACGTGATGCTGAGCGTGTGAG
genomic: GCCTACAACCTTATTGTTCCGGGGGATACCCTCCAGTCCGTCACTGTGAGgtgagttcct ... tgattcccagGAAAGTTCTGAGAGAGATGGCATCTGGAGGACGTGATGCTGAGCGTGTGAG