Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGTCGACGACATCAAGTCGCAGCTCGAGGACGCCTGCGAGCAGGTCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCgtaagcaccagaccggccgatcaccactccgatccctgtatttttgatgaattgatcgggaacgaacgaactgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os04g55740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g55740.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G443885_T01 (Zea mays), 5'ss of exon 3
GGTCGTCGACGACATCAAGTCGCAGCTCGAGGACGCCTGCGAGCAGGTCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCCgtaagcaccagaccggccgatcaccactccgatccctgtatttttgatgaattgatcgggaacgaacgaactgtgtgcag------------------------------------------------
 || || |||||||||||| |||||||||||||||| ||| | |||   ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |  |  | |  ||||  |    |    |   | || |   ||  |      |||      ||  ||  |                                                
CGTGGTTGACGACATCAAGGCGCAGCTCGAGGACGCATGCAACCAGACAGTCTCCTGCGCCGACATCCTCGCAGTCGCCGCCCGCGACTCCGTCGTCGCCgtaagcacgacat-gcacaaagaccaagcaagactagctgcatatgctagcttttttccattcgatttccatgcatggtggtgagtggtgacaagctaattgcaccatctcctctgcatgcaatgcag