1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTTGAAGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttgtatactcttgcctctcatgtcttattgtttattgcagttgttcagttctatctaaaattttttttataacaagcag
species | Oryza sativa |
transcript | LOC_Os04g52960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|58692865|gb|CK081552.1|CK081552
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|218494329|gb|FG970076.1|FG970076
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|29633107|gb|CB638116.1|CB638116
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|86888434|gb|CI303716.1|CI303716
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|88349407|gb|CI621517.1|CI621517
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTAACTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|88341180|gb|CI639937.1|CI639937
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|58683130|gb|CK071817.1|CK071817
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCGCCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|88364704|gb|CI612519.1|CI612519
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|88358345|gb|CI606854.1|CI606854
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAACEST: gi|58662979|gb|CK051665.1|CK051665
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
EST: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGG GAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
genomic: AGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttg ... taacaagcagGAAAGAGAAATGCAGAAGATGAGATTGAGAAAGCTGTGAGTGCCAAGAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTTGAAGTTGCACCTACCTCTGTCTCAGTCTCAGAGGGGAAATCTGGGAAGAAGGgtaacatttgtatactcttgcctctcatgtcttattgtttattgcagttgttcagttctatctaaaattttttttataacaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG