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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatggttttcctgtggcagcgattgtgaatgaggatttctcctatatagatagaatgtgcttgtatactgttgtgtgtagaaatgtttggttttt...

Basic information

species Oryza sativa
transcript LOC_Os04g52710.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52710.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 2
GGTGACCAAGGAGACGAATGTGCATGTGAAGATCAACCTGGATGGCACTGGTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatggttttcctgtggcagcgattgtgaatgaggatttctcctatatagatagaatgtgcttgtatactgttgtgtgtagaaatgtttggttttt------
||||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| ||||  ||||  |||||| |    | | ||||  ||     |  ||||  || | ||| | ||| ||     || | | |   | | |||||| |        
GGTGACCAAAGAGACAAATGTGCACGTGAAGATCAACCTTGATGGCACTGGTGTCGCCGAGTGTAGCACAGGGATACCGTTCTTGGATCACATGCTCGATgtgagta--gtttatctgtggtaat--tagggaatcgggggcatttttata--gacataatatacttctacttctttttctttgtgattatttggtatgcatggat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58588701|gb|CF987009.1|CF987009
EST:     GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: gi|29658246|gb|CB654521.1|CB654521
EST:     GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGAT                         CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: gi|38471849|gb|CF955980.1|CF955980
EST:     GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAACTGGCATCTCA
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCA
EST: gi|29676398|gb|CB672673.1|CB672673
EST:     GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGAT                         CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
EST: gi|218497506|gb|FG955300.1|FG955300
EST:     GTGTTGCCGATTGCAGCACAGGGATACCGTTCTTGGATCACATGCTCGAT                         CAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC
genomic: GTGTTGCCGATTGCAGCACAGGGATACCTTTCTTGGATCACATGCTCGATgtaagtatgg ... taacttacagCAACTGGCATCTCATGGGCTCTTTGACGTATGTGTTAAGGCAAAGGGTGAC