Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtccctctccgtaaatgttatgaataagcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat...

Basic information

species Oryza sativa
transcript LOC_Os04g51270.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51270.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G094928_T03 (Zea mays), 5'ss of exon 2
---CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtc--cctctccgt----aaatgttatgaata-agcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat
   |  |  ||||||||| ||||| ||||| ||||| |||||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| |||||||    | | ||  | | |  ||    |    || |  ||  ||| || | ||||  ||  |  |   |||  |||   | | |  |      |   |        
GAGCTGAGGGATGGACGCGAACAGGCGCCAGAGTGGGATCCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCCGCTAGAGCTGgtagtgttttctcatcttttttgtcccaagccattgtagatctagcgtagcgttaggcagcaacaaccttgtgaatgagttcgttccattcacttagaca-------

upper sequence: LOC_Os04g51270.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G124103_T02 (Zea mays), 5'ss of exon 2
---CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtccctctccgtaaatgttatgaataagcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat---
   |  | |||||||||| ||||| |||||| |||| || ||||| ||| ||||||| ||||| |||||||||||||| || ||||| ||||| |||||||    | | ||   ||     | | | |    | |    ||   | |     |  |||     ||    ||   |||||  |||  | || | | | |   
GAGCTGAGAGATGGACGCCAACAGGCGCCAAGGTGGGATTCAGCAGTTGCTGGCTGCGGAGCAGGAGGCTCAGCAAATTGTGAATGCGGCTAGAGCTGgtagtgttttctcatccttttctagtat-acatgtcattgcaaatctcgcttagggttagataacagca--accttgtgaatgtgttcgttccagtcacttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88976560|gb|CI024681.1|CI024681
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|8858728|gb|AU096046.1|AU096046
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88728180|gb|CI751690.1|CI751690
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|86416976|gb|CI030987.1|CI030987
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCCAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|33808450|gb|CF330112.1|CF330112
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88760409|gb|CI769965.1|CI769965
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|33659779|gb|CF282392.1|CF282392
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|700659|gb|D46950.1|D46950
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88738132|gb|CI761640.1|CI761640
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|700675|gb|D46966.1|D46966
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88581807|gb|CI699017.1|CI699017
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|2276040|gb|C25017.1|C25017
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCANAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88361918|gb|CI682092.1|CI682092
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88721963|gb|CI745473.1|CI745473
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88736650|gb|CI760158.1|CI760158
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|55408685|gb|CV721061.1|CV721061
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|11863327|gb|AU066028.2|AU066028
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|30226563|gb|CB964455.1|CB964455
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|55433931|gb|CV730082.1|CV730082
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|38468888|gb|CF953019.1|CF953019
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTANATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88345939|gb|CI632412.1|CI632412
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88690585|gb|CI734664.1|CI734664
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|163929332|gb|EG713757.1|EG713757
EST:     GCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|87004212|gb|CI296754.1|CI296754
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|27547337|gb|CA767335.2|CA767335
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|58593666|gb|CF991974.1|CF991974
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATGG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88765387|gb|CI774481.1|CI774481
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|55438738|gb|CV732667.1|CV732667
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|86503200|gb|CI145833.1|CI145833
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|23514183|gb|BU673507.1|BU673507
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|58694530|gb|CK083217.1|CK083217
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|8857393|gb|AU094711.1|AU094711
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|2280867|gb|C25362.1|C25362
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88982545|gb|CI028010.1|CI028010
EST:     TAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: TAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|163923261|gb|EG711070.1|EG711070
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88288582|gb|CI663371.1|CI663371
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|568132|gb|D38967.1|D38967
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|163925475|gb|EG715368.1|EG715368
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|14192429|gb|AU184640.1|AU184640
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88688869|gb|CI732445.1|CI732445
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|25806235|gb|CA762196.1|CA762196
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|8528073|gb|AU092888.1|AU092888
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88360665|gb|CI647675.1|CI647675
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTANATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|568319|gb|D39163.1|D39163
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|8858718|gb|AU096036.1|AU096036
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|109711760|gb|CI028930.1|CI028930
EST:     TAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: TAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|218502328|gb|FG952293.1|FG952293
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|88689212|gb|CI732788.1|CI732788
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
EST: gi|218497695|gb|FG953495.1|FG953495
EST:     GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGACTG                         CAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG
genomic: GTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctct ... tgtttggcagCAAAATCGGCAAGGCTTAGGCAAGCAAAAGAGGAGGCTGAGAGGGAAATAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACAAAGATGGACGCAAACAGACGCCAAAGTGGAATCCAGCAATTGTTGGCTGCAGAGCAAGAGGCTCAGCAAATAGTAAATGCTGCTAGGGCTGgtaactctctgtccctctccgtaaatgttatgaataagcataacattagagagagagtagtatgtagatgtactaggtgaacatgtctgctctattgaat

- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT