1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGAAGGCATCATCCGCGACGTCGAGCGCGCCGTCTCCAGCTCCCTCTGCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACTgtacgtacgcggtttctacccagattttagaatgttggtttcttgtactgtctcattgtgatgtatgttccgttcgagtgcatgcacttgcgcag
species | Oryza sativa |
transcript | LOC_Os04g48210.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACT ATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGGEST: gi|88688247|gb|CI731823.1|CI731823
genomic: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACTgtacgtacgc ... acttgcgcagATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGG
EST: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACT ATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGGEST: gi|88690658|gb|CI734737.1|CI734737
genomic: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACTgtacgtacgc ... acttgcgcagATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGG
EST: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACT ATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGG
genomic: GCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACTgtacgtacgc ... acttgcgcagATGGTGTTCGATCTTGCTGCAAGCAAGCTGCTCGGCCTGGAGCCGTCGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAAGGCATCATCCGCGACGTCGAGCGCGCCGTCTCCAGCTCCCTCTGCACCTGGTCCACCTTGCCGGCCGTCGAGCTCAAAGAAGCCGTCTCCACTgtacgtacgcggtttctacccagattttagaatgttggtttcttgtactgtctcattgtgatgtatgttccgttcgagtgcatgcacttgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC