Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86493137|gb|CI135770.1|CI135770EST: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATAA
genomic: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|89189029|gb|CI012179.1|CI012179EST: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
genomic: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|86595001|gb|CI258255.1|CI258255EST: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCCATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
genomic: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|27546535|gb|CA764601.2|CA764601EST: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTAGAGTGATGA
genomic: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|88224920|gb|CI224442.1|CI224442EST: ATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
genomic: ATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|86505783|gb|CI148416.1|CI148416EST: GAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCGTGGAGTGATGA
genomic: GAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
EST:
gi|29676795|gb|CB673070.1|CB673070EST: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATG CTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
genomic: CGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggct ... tttcgttcagCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTCTCCTGGAGTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCAGAAAATGGTTATGGCCTTGTCAACTGATAAGTCTGTATGGGATGCCGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCAGGATGgtatgtggcttttagctttagcattttaagtacatcttttaataataaaataaaagatcaatttgggcctggataagcgatattaatctggttggtactttcgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG