Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGAGTTCCTAAAACTGCAAGCAAGGATGAGCTAAAGAAGGCATACCGGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgtgccagtgtgacatgcaattgtttgaattcagaatctctattttgtttttacatttttatgtgttttacag

Basic information

species Oryza sativa
transcript LOC_Os04g46390.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g46390.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S174_97V6.1 (Physcomitrella patens), 5'ss of exon 1
TCTTGGAGTTCCTAAAACTGCAAGCAAGGATGAGCTAAAGAAGGCATACCGGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgtgc-cagtgtgacatgcaattg--tttgaattcagaatctctattttgtttttacatttt-tatgtgttttacag-------------------------------------------------
 ||||| ||   |||    |||     ||||||||| |||||||| ||| |||||||||| || || |||||||||||||| || || |||||||| |||||  || |  || |  | |||     | | |   |||| ||       | |    | | |  || |     |       | |||                                                 
CCTTGGGGTGGGTAAGGGCGCATCGCCGGATGAGCTTAAGAAGGCGTACAGGAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCAGAGAAGgtagggctacgctctatttgattctgagtaggacttgagttttagccgtttgggat-tgtcgacgtgcagcacagaaggtgcagatgtgagatgttgttatagatgaactaagacgtagctttctctctgcag

upper sequence: LOC_Os04g46390.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ30223 (Selaginella moellendorffii), 5'ss of exon 1
TCTTGGAGTTCCTAAAACTGCAAGCAAGGATGAGCTAAAGAAGGCATACCGGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgtgccagtgtgacatgcaattgtttgaattcagaatctctattttgtttttacatttttatgtgttttacag
 ||||| ||  | ||   || |     ||| ||  | |||||||||||||||||||| ||||| || || || || ||||||||||| ||||| ||  |||| |||   |||          |    |||   || |||    ||| | | |  |   |    ||    ||| |   |||
CCTTGGCGTCTCCAAGGATGTATCGCCGGAGGATTTGAAGAAGGCATACCGGAAGGCCGCCATCAAGAATCACCCCGACAAGGGAGGCGATCCCGAGCAGgtaagg---tgc----------tttgtttgccggatttc----tcttt-tctcatgcctgggattgccggtgatccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88433437|gb|CI594251.1|CI594251
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACTAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88736059|gb|CI759567.1|CI759567
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|84117330|gb|CD151097.1|CD151097
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88719888|gb|CI741823.1|CI741823
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88672830|gb|CI726946.1|CI726946
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|1631956|gb|C19685.1|C19685
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29639999|gb|CB645008.1|CB645008
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88735188|gb|CI758696.1|CI758696
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88730903|gb|CI754516.1|CI754516
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88717669|gb|CI741179.1|CI741179
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33653448|gb|CF276062.1|CF276062
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88352585|gb|CI624524.1|CI624524
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29643236|gb|CB648243.1|CB648243
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88397983|gb|CI585486.1|CI585486
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|13807441|gb|AU181957.1|AU181957
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29643291|gb|CB648298.1|CB648298
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88726075|gb|CI749730.1|CI749730
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33658091|gb|CF280705.1|CF280705
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88340296|gb|CI652645.1|CI652645
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29678521|gb|CB674796.1|CB674796
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|14714017|gb|AU197958.1|AU197958
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33655861|gb|CF278475.1|CF278475
EST:     GAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGG-ATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88734961|gb|CI758469.1|CI758469
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33654185|gb|CF276799.1|CF276799
EST:     GAAGGCTGCCATAAAAAACCATCCTGACAAGGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GAAGGCTGCCATAAAAAACCATCCTGACAAGGG-AGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88742159|gb|CI765667.1|CI765667
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88733935|gb|CI755445.1|CI755445
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88716970|gb|CI740480.1|CI740480
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29668764|gb|CB665039.1|CB665039
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33654740|gb|CF277354.1|CF277354
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29637040|gb|CB642049.1|CB642049
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88365054|gb|CI616473.1|CI616473
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATC-TGAGAACAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29645124|gb|CB650131.1|CB650131
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88728108|gb|CI751618.1|CI751618
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACCTGATCCTGACAAGAG
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCAC-TGATCCTGAGAAGAG
EST: gi|1631830|gb|C19559.1|C19559
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|4715680|gb|AU056796.1|AU056796
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29657304|gb|CB653579.1|CB653579
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTATAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88406588|gb|CI599081.1|CI599081
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33657288|gb|CF279902.1|CF279902
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88736955|gb|CI760463.1|CI760463
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29614042|gb|CB619055.1|CB619055
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|218494200|gb|FG946885.1|FG946885
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|58593485|gb|CF991793.1|CF991793
EST:     GAAGGCGTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GAAGGC-TGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88352253|gb|CI613904.1|CI613904
EST:     GGAAGGCTGACATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88742330|gb|CI765838.1|CI765838
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|29680639|gb|CB676914.1|CB676914
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88763406|gb|CI772858.1|CI772858
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88723249|gb|CI746759.1|CI746759
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|33694058|gb|CF322297.1|CF322297
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88316124|gb|CI620402.1|CI620402
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
EST: gi|88762974|gb|CI772530.1|CI772530
EST:     GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAG                         TTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA
genomic: GGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 423

TCTTGGAGTTCCTAAAACTGCAAGCAAGGATGAGCTAAAGAAGGCATACCGGAAGGCTGCCATAAAAAACCATCCTGACAAGGGAGGGGATCCAGAAAAGgtgaggatgt ... tgttttacagTTTAAAGAATTATCACAAGCGTATGAGGTTCTCACTGATCCTGAGAAGAGAGACATATATGACCAATATGGGGAGGATGCTCTTAAGGATGGAATGGGAG




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