1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactatagaacaatattttccttttgtcatattagtgctgggtgctaatgattgtaatgagctagcaaatatgttaacaagttgacataattgtcaccc...
species | Oryza sativa |
transcript | LOC_Os04g45040.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAEST: gi|33675238|gb|CF303477.1|CF303477
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAEST: gi|27554371|gb|CA998271.1|CA998271
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: CCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAEST: gi|33676885|gb|CF305124.1|CF305124
genomic: CCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAEST: gi|58653489|gb|CK042169.1|CK042169
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGAEST: gi|58673974|gb|CK062660.1|CK062660
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
EST: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAG GATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
genomic: GGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactataga ... aaatgtgtagGATGTTACTGCTACCAAGGGAAATGAATTTGAAGACTATTTTCTGAAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACAAGACTGGAAGGCCCAACTGAAGCTCCCACCGCAAGATACACGCTACAGGACAGAGgtactatagaacaatattttccttttgtcatattagtgctgggtgctaatgattgtaatgagctagcaaatatgttaacaagttgacataattgtcaccc
- - - - - - - - - - - CTGAAG
- - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - GCAAGA