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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagatgatattgctggatcatgtttacatgttcttttgatttcagaccatgtgcaaattgcttcatattggttgtttttaactatttctagtttt...

Basic information

species Oryza sativa
transcript LOC_Os04g42270.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25800651|gb|CA756612.1|CA756612
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88307620|gb|CI644655.1|CI644655
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|38475453|gb|CF959586.1|CF959586
EST:     AGGCAGCCCGTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCC-TGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58676524|gb|CK065211.1|CK065211
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58688984|gb|CK077671.1|CK077671
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|8527945|gb|AU092760.1|AU092760
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCCAAGCCTTGAAGGCAGCC
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGG-CCCAAGCCTTGAAGGCAGCC
EST: gi|88429107|gb|CI689987.1|CI689987
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88354083|gb|CI636281.1|CI636281
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33685953|gb|CF314192.1|CF314192
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88826966|gb|CI777531.1|CI777531
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33674425|gb|CF302664.1|CF302664
EST:     AGGCAGCCCTGTGAAGCTCCAATGGTTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88592694|gb|CI710816.1|CI710816
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33692008|gb|CF320247.1|CF320247
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|3767290|gb|AU031400.1|AU031400
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33828511|gb|CF340074.1|CF340074
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33827197|gb|CF339405.1|CF339405
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88338661|gb|CI644118.1|CI644118
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|218488640|gb|FG955525.1|FG955525
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|95101610|gb|CI697130.1|CI697130
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|38468469|gb|CF952600.1|CF952600
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88569976|gb|CI661151.1|CI661151
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88326375|gb|CI659805.1|CI659805
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58587085|gb|CF985393.1|CF985393
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|55441502|gb|CV734073.1|CV734073
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|11233361|gb|AU164773.1|AU164773
EST:     AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33829354|gb|CF340500.1|CF340500
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88329285|gb|CI653197.1|CI653197
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|396941481|gb|HO188690.1|HO188690
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88581674|gb|CI698877.1|CI698877
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|163921231|gb|EG710459.1|EG710459
EST:     GCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: GCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58586947|gb|CF985255.1|CF985255
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88432759|gb|CI690605.1|CI690605
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|86894167|gb|CI306093.1|CI306093
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88571491|gb|CI662864.1|CI662864
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|24208680|gb|AU225707.1|AU225707
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|4716140|gb|AU057256.1|AU057256
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88375472|gb|CI681245.1|CI681245
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|218499743|gb|FG949520.1|FG949520
EST:     AGGCA-CCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88331042|gb|CI638450.1|CI638450
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88742992|gb|CI766500.1|CI766500
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88432856|gb|CI690707.1|CI690707
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33656585|gb|CF279199.1|CF279199
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|13806589|gb|AU181577.1|AU181577
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|55441225|gb|CV733928.1|CV733928
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88324985|gb|CI644999.1|CI644999
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33827283|gb|CF339451.1|CF339451
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33828739|gb|CF340189.1|CF340189
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|11233365|gb|AU164777.1|AU164777
EST:     AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88827459|gb|CI778024.1|CI778024
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88302352|gb|CI668198.1|CI668198
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88338525|gb|CI645779.1|CI645779
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88844548|gb|CI020395.1|CI020395
EST:     TCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: TCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88766104|gb|CI775194.1|CI775194
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33656555|gb|CF279169.1|CF279169
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88358697|gb|CI649246.1|CI649246
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58594690|gb|CF992998.1|CF992998
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88344301|gb|CI655695.1|CI655695
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|38478217|gb|CF962350.1|CF962350
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|163923632|gb|EG713325.1|EG713325
EST:     CAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: CAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33687882|gb|CF316121.1|CF316121
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|55440442|gb|CV733530.1|CV733530
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|58666340|gb|CK055026.1|CK055026
EST:     GAGGCAAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: GAGGTAAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88695648|gb|CI737686.1|CI737686
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88453549|gb|CI680803.1|CI680803
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88572919|gb|CI664490.1|CI664490
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88331741|gb|CI640772.1|CI640772
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88827152|gb|CI777717.1|CI777717
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88577603|gb|CI674201.1|CI674201
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88368782|gb|CI651248.1|CI651248
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88339646|gb|CI660436.1|CI660436
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88328324|gb|CI651335.1|CI651335
EST:     AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AAGAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|163926729|gb|EG713745.1|EG713745
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|33671911|gb|CF300150.1|CF300150
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|88765347|gb|CI774441.1|CI774441
EST:     AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
EST: gi|38479237|gb|CF963370.1|CF963370
EST:     AGGCAGCCCTGTGAAGCTCCAGTGGCTCCTAAAG                         CTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA
genomic: AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagat ... ttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGgtacacagatgatattgctggatcatgtttacatgttcttttgatttcagaccatgtgcaaattgcttcatattggttgtttttaactatttctagtttt

- - - - -  TGAAGC