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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatttctaccttctgttttaaggaaataatacagaatacacttcacgtgatctcctgacattttctttaatctttctgatgccccag

Basic information

species Oryza sativa
transcript LOC_Os04g41910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g41910.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G171660_T03 (Zea mays), 5'ss of exon 2
AGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatttctaccttctgttttaaggaaataatacagaatacacttcacgtgatctcctgacattttctttaatctttctgatgccccag
||| ||||||||||||||||||||||||  |||||||||||| | ||||| ||  |||| ||||   | |  ||| ||   ||||||||| ||||  |||||||    || || |||  |||  |  |    ||||  | |      |      | | | ||     ||   | ||  | | ||  |      
AGCACAATGCTCTGGGCAGAAGGGAGGAAGGAATGGATGCCACTCTCGTCCATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgttgctgcct--tgtactgtgcctgtaatggaaa-----ttctgtaaggttttcttctcattcactgaacttctgtgcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88393636|gb|CI619928.1|CI619928
EST:     GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAG                         GAATTGAAGATGATTTCG
genomic: GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatt ... gatgccccagGAATTGAAGATGATTTCG
EST: gi|29636733|gb|CB641742.1|CB641742
EST:     GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAG                         GAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGG
genomic: GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatt ... gatgccccagGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGG
EST: gi|88347690|gb|CI655043.1|CI655043
EST:     ATCCCTGACCTACCTGCGGTGGTCACAAAAAAGGATCAACCCTGATGAAG                         GAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCT
genomic: ATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACC-TGATGAAGgttactgatt ... gatgccccagGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCT
EST: gi|86903824|gb|CI302470.1|CI302470
EST:     GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAG                         GAATTGAAGATGATTTCGATCAATTTCACAAGGAGGTTATAGAAGCTGAGG
genomic: GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatt ... gatgccccagGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGG
EST: gi|29676260|gb|CB672535.1|CB672535
EST:     GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAG                         GAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGG
genomic: GATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGgttactgatt ... gatgccccagGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGG