1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCCTTCAGAGCAAGGTTGTCTCTCTGTTATTGTCCTCGGGGCTTCTGGAGACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgactcctgagtcctgacaataactagctgtttcatgtacaatttccaaaatctacactacgaaaggaacaatctagtgcacagtcatttgagg...
species | Oryza sativa |
transcript | LOC_Os04g40874.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88421242|gb|CI569087.1|CI569087
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGGATATATTTGGGTATGCGAGATCAAACEST: gi|88383894|gb|CI631784.1|CI631784
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|29663317|gb|CB659592.1|CB659592
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88338649|gb|CI644106.1|CI644106
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCEST: gi|88348462|gb|CI629951.1|CI629951
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
EST: CTAGCCAAGAAGAAAACTTTCCCGGNCCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88373258|gb|CI614594.1|CI614594
genomic: CTAGCCAAGAAGAAAACTTTCCCGG-C-ACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGGTCAAACEST: gi|88411783|gb|CI571275.1|CI571275
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88313812|gb|CI597443.1|CI597443
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88449978|gb|CI572109.1|CI572109
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|58654814|gb|CK043494.1|CK043494
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTGCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88719764|gb|CI743274.1|CI743274
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88421660|gb|CI616985.1|CI616985
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88447483|gb|CI584598.1|CI584598
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|58611861|gb|CK039573.1|CK039573
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88388045|gb|CI590321.1|CI590321
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88765888|gb|CI774978.1|CI774978
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCEST: gi|88305522|gb|CI630684.1|CI630684
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88407965|gb|CI588994.1|CI588994
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88430411|gb|CI567430.1|CI567430
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88403389|gb|CI573112.1|CI573112
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88409948|gb|CI571205.1|CI571205
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88737684|gb|CI761192.1|CI761192
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|29634314|gb|CB639323.1|CB639323
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|29614696|gb|CB619709.1|CB619709
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88396043|gb|CI595591.1|CI595591
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTACATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88421686|gb|CI569067.1|CI569067
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88363986|gb|CI607296.1|CI607296
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTC-ATCTTTTTGCACAG GGATTTATACAACTCAGEST: gi|88300652|gb|CI587456.1|CI587456
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAA-TCAG
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|58670061|gb|CK058747.1|CK058747
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|29680803|gb|CB677078.1|CB677078
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88417228|gb|CI576302.1|CI576302
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|29635386|gb|CB640395.1|CB640395
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTATCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88352601|gb|CI624540.1|CI624540
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|88363865|gb|CI607175.1|CI607175
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: CCTAGCCAAGAAGAAAACTTTCCCGGCACCTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|86904132|gb|CI304566.1|CI304566
genomic: CCTAGCCAAGAAGAAAACTTTCCCGGCAC-TCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATAEST: gi|163920079|gb|EG712021.1|EG712021
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATA
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAACEST: gi|117243651|gb|CT843162.1|CT843162
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
EST: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAG GGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
genomic: ACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgac ... tgtgttacagGGATTTATACAATCAGGTGAAGTGCATATATTTGGGTATGCGAGATCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTTCAGAGCAAGGTTGTCTCTCTGTTATTGTCCTCGGGGCTTCTGGAGACCTAGCCAAGAAGAAAACTTTCCCGGCACTCTTCCATCTTTTTGCACAGgtaatttgactcctgagtcctgacaataactagctgtttcatgtacaatttccaaaatctacactacgaaaggaacaatctagtgcacagtcatttgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA