1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCTAGGTCCCACTACTTGCTTGCAATCCGAATCACAATGGAAAAAAGGCAAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaatctttctatagtttggcattattgtattttggtattacaattttgtatatgatgcattgattccgcattgaaagcaataatccctcgcgga...
species | Oryza sativa |
transcript | LOC_Os04g35700.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|66924320|gb|CX111168.1|CX111168
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|58695587|gb|CK084274.1|CK084274
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGAEST: gi|29629743|gb|CB634752.1|CB634752
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
EST: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAG TGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
genomic: AAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaat ... aatcatgcagTGAAAATGGGCAGTTCTGTGCGATTAAGGAGGTCCAAGTTATTTCGGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTAGGTCCCACTACTTGCTTGCAATCCGAATCACAATGGAAAAAAGGCAAATTGTTAGGGAGCGGTACATTTGGCCAGGTTTACCTTGGATTTAACAGgtattggaatctttctatagtttggcattattgtattttggtattacaattttgtatatgatgcattgattccgcattgaaagcaataatccctcgcgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc