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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg...

Basic information

species Oryza sativa
transcript LOC_Os04g35090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G065237_T01 (Zea mays), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg-----
|||||||  ||||||||| |||||||||||||||||||||||||| | |||  |     || |   |  | | |      |||| |      ||   || |   ||||  |  |        ||||  |    |||  || | |  ||      
ATCATCCTCAAGAAGAACAGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatggtccactagactcgcagtagg-----gtaacctgggctgattggttgtttcgccttctaggaggtgacagatcttcaaattattttcgtattactaggag

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G043737_T01 (Zea mays), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg-
|||||||| |||||||||||||||||||||||||||||||||||| | |||  ||||||||||||||   |   | |   |||     ||  | |  |    |  |   |    | |||  |          || |  ||          
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgtggttcttggtccac-tagactcgcagtagggtaacctgggctgattggttgtttcaccttctaggaggtgacaggtcttcaaattattttcgtat

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G050925_T01 (Zea mays), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttag-gtttgcaaaacg
|||||||| |||||||||||||||||||||||||||||||||||| | |||  | | || || ||||   |   | |   |||     ||| | |  |    |  |   |  | | |||  | |   ||  |   |  |||| |  |   
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgcgattattcgtccgc-taaactcgcagtagggtaacttgcgttggttggttgtttcgctttctaggaggggacgtcttcaaactgtttccttatta

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G459828_T01 (Zea mays), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg
|||||||| |||||||||||||||||||||||||||||||||||| | |||  |     || |   |  | | |      |||| |      ||   || |   ||||  |  |        ||||  |    |||  ||         
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAgtacctcttcaagggtatggtccactagactcgcagtagg-----gtaacctgggctgattggttgtttcgccttctaggaggtgacagatcttcaaattatttt---------

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G02410.3 (Glycine max), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttc----ttg--gtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg
||||| ||  |||||||||| || ||||||||||| |||||||||||||||| ||   |     |||  ||| |   |||  | |   | | ||  || |   |||  |     |   |||||  |  |||  |  ||||  | ||||| ||   
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgttgtctcctcttgtgctttacagttgtgttaaaattgtaaggtgtgtg---tgtttgattcagag-ggagttt--gctttgcgaag--

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G37470.1 (Glycine max), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttt-taggtttgcaaaacg---
||||||||| ||||||||||||| ||||||||||| |||||||||||||||  |||   ||| |    |||   |   || |  |||| |   |||  ||    || | |  ||   | || |  ||    ||  | ||| |  |    |   
ATCATCCCGGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGgtaggtg--ccttagcatttatc-acgaatcatcttcgttcgttagggtta----cgtctcgttgaacaatgaatcttacctttcgttggtgtttatggtgcag

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G02070.1 (Glycine max), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg
||||| ||  ||||||||||||| ||||||||||| |||||||||||||||  |||  | | |      ||| |     |||  ||||    || |  |  | |   |    | |||  |  |  | | ||                  
ATCATTCCTGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGgtaggtgcct-tagaatttcattggggttacgtc-tcgtt---gaagaatgaatcttaccttcttttttcttaatgtcggtgcag---------------

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G02410.2 (Glycine max), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttc----ttg--gtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg
||||| ||  |||||||||| || ||||||||||| |||||||||||||||| ||   |     |||  ||| |   |||  | |   | | ||  || |   |||  |     |   |||||  |  ||                         
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgttgtctcctcttgtgctttacagttgtgttaaaattgtaaggtgtgtg---tgtttgattcag-------------------------

upper sequence: LOC_Os04g35090.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagt-ggtt--cttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg
||||| ||  |||||||||| || ||||||||||| |||||||||||||||| ||  |||  | | ||| |   |||  | |     | ||  |  |   |||  |         |||||  |  ||                         
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgtctcctcttgtgctttacggttgtgtttaaattgtaacgt-------gtgtttgattcag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88586676|gb|CI703447.1|CI703447
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGCCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|218481193|gb|FG966663.1|FG966663
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGTTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|218482287|gb|FG965131.1|FG965131
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGTTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88586980|gb|CI704703.1|CI704703
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|33692611|gb|CF320850.1|CF320850
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88580859|gb|CI697816.1|CI697816
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|66915713|gb|CX102561.1|CX102561
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88342821|gb|CI640154.1|CI640154
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88339972|gb|CI650419.1|CI650419
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCAACCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|55412965|gb|CV725341.1|CV725341
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88341568|gb|CI641320.1|CI641320
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGGTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88381690|gb|CI682360.1|CI682360
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|86900491|gb|CI298326.1|CI298326
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88742193|gb|CI765701.1|CI765701
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88327130|gb|CI652168.1|CI652168
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|218480537|gb|FG944727.1|FG944727
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGTTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88577899|gb|CI674514.1|CI674514
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88349342|gb|CI678323.1|CI678323
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88695592|gb|CI737630.1|CI737630
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTANAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88402180|gb|CI615023.1|CI615023
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTATCTCTTCCAAG                         AGGGAGTGGTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|58592650|gb|CF990958.1|CF990958
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88331231|gb|CI639642.1|CI639642
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|58594471|gb|CF992779.1|CF992779
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88336672|gb|CI643997.1|CI643997
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88571263|gb|CI662636.1|CI662636
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88347660|gb|CI655013.1|CI655013
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTT---AG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGCCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88586388|gb|CI704085.1|CI704085
EST:     ATCATCCCGAAGAAGAACCGNAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88363378|gb|CI643236.1|CI643236
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|58662116|gb|CK050796.1|CK050796
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGTTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88349311|gb|CI678288.1|CI678288
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|86594661|gb|CI255737.1|CI255737
EST:     GAGATCTGCAAGTACCTCTTCCAAG                         AGGGA-TGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: GAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88307444|gb|CI643285.1|CI643285
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|58601701|gb|CK012229.1|CK012229
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88588939|gb|CI706786.1|CI706786
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|218483589|gb|FG966694.1|FG966694
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88340297|gb|CI652646.1|CI652646
EST:     ATCATCCCGAAGAAGAANCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|38473025|gb|CF957157.1|CF957157
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|33688819|gb|CF317058.1|CF317058
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|218488268|gb|FG947103.1|FG947103
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGTTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|33666693|gb|CF297660.1|CF297660
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|33692922|gb|CF321161.1|CF321161
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|55409436|gb|CV721812.1|CV721812
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88329503|gb|CI648565.1|CI648565
EST:     ATCATCCCGAAGAAGAACCGCACTGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACC-GCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88346511|gb|CI637357.1|CI637357
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88333438|gb|CI640470.1|CI640470
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88321700|gb|CI672841.1|CI672841
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88575576|gb|CI669721.1|CI669721
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88414405|gb|CI691569.1|CI691569
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|55432256|gb|CV729148.1|CV729148
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88355631|gb|CI628915.1|CI628915
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88340686|gb|CI647564.1|CI647564
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGNAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88332899|gb|CI639747.1|CI639747
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|88308887|gb|CI654170.1|CI654170
EST:     ATCATCCCGAAGAAGAACCGNAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
EST: gi|55438242|gb|CV732416.1|CV732416
EST:     ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA
genomic: ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 74 (downstream exon)
Score: 235

ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggtt ... gttgttgcagAGGGAGTGCTGTATGCCAAGAAGGACTACAACCTGGCGAAGCACCCGCAGATCGATGTGCCGAACCTGCAGGTGATCAAGCTCATGCAGAGCTTCAAGTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAGgtcagtggttcttggtccctatttgcacctcgtaatcgtactagaggcgtagagccgccgccatgtttagtggagattgttgttttaggtttgcaaaacg

- - -  CGAAGA
- - - -  AAGAAG
- - - - - - AAGAAC
- - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc