1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGATTGGCCCCTCCATCAAATCCAAAATGGAAAAGGGTGCTTCTCAAGATTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAGgtattttgttagctatgcgtccacccagtctgatgctgtcctgaattttcacacaaaactttgtgatcttgccag
species | Oryza sativa |
transcript | LOC_Os04g33300.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAG GTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTTEST: gi|218492483|gb|FG960107.1|FG960107
genomic: TTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAGgtattttgtt ... atcttgccagGTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTT
EST: ACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAG GTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTTEST: gi|29665813|gb|CB662088.1|CB662088
genomic: ACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAGgtattttgtt ... atcttgccagGTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTT
EST: TTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAG GTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTT
genomic: TTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAGgtattttgtt ... atcttgccagGTAATTATGCTGATTGCCCGAGAAGTTCAAGTGGCATGCCGCCATGGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGATTGGCCCCTCCATCAAATCCAAAATGGAAAAGGGTGCTTCTCAAGATTGGGGGCACAGCATTGGCTGGAGCGCCTCCTCAAAATGTTGATCCTAAGgtattttgttagctatgcgtccacccagtctgatgctgtcctgaattttcacacaaaactttgtgatcttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC