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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACTACACCGGCACTCTCCTCGACGGAACCAAGTTCGATTCCAGCCGCGATCGTGGAACCCCCTTCAAATTCAGCCTCGGCCAAGgtgcggatcggattcccagtttccccccacatttcgtcgcaatattcaccatagttgaattgaattgccgaatcgtactgaatttttttgaaaaatctgcag

Basic information

species Oryza sativa
transcript LOC_Os04g28420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g28420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G154685_T01 (Zea mays), 5'ss of exon 2
TTCACTACACCGGCACTCTCCTCGACGGAACCAAGTTCGATTCCAGCCGCGATCGTGGAACCCCCTTCAAATTCAGCCTCGGCCAAGgtgcggatcggattcccagtttccccccacatttcgtcgcaatattcaccatagttgaattgaattgccgaatcgtactgaatttttttgaaaa--atctgcag---
| || ||||| || || ||  | |||||||| ||||| ||||| ||||| || ||||||||||| |||| |||||  || || ||||||||| |   |     ||| |||  |    ||      |  |     |   |        | | | |     | ||| |  | |     | |    || ||| |   
TGCATTACACTGGTACCCTTTTGGACGGAACGAAGTTTGATTCGAGCCGTGACCGTGGAACCCCATTCAGATTCAAACTTGGGCAAGgtgcgtaaaag-----cagcttcaacaagaatggtactgtgagtgatatggtgaaatcggtcattagttctgtggtaatttaatgccacgcacgttatttgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2309636|gb|C25791.1|C25791
EST:     CGATTCCAGCCGCGATCGTGGAACCCCCTTCAAATTCAGCCTCGGCCAAG                         GGGAGGTGATCAAGGGGT
genomic: CGATTCCAGCCGCGATCGTGGAACCCCCTTCAAATTCAGCCTCGGCCAAGgtgcggatcg ... aaatctgcagGGGAGGTGATCAAGGGGT