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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCTGCTCAACTACCGCAAGGACGGCGCCCCGTTCTGGAACCTCCTCACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATCAAGTTCATCGGgtaagtaagcgaagcactagtcgttcgtcgccattgatgagatgagatgagctttgcattcgagttctgggctgcgattctgattcgggtatgagcgaacag

Basic information

species Oryza sativa
transcript LOC_Os04g23890.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g23890.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 1
GCCGCCTGCTCAACTACCGCAAGGACGGCGCCCCGTTCTGGAACCTCCTCACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATCAAGTTCATCGGgtaagtaa-gcgaagcactagtcgttcgtcgccattgatgagatgagatgagctttgcattcgagttctggg--ctgcgattctgattcgggtatgagcgaacag
||||| ||||||||||||||||||||||| | || ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||   |    ||  |  ||  | ||| ||   ||   |   || ||| ||    |||  ||  ||||  |                        
GCCGCTTGCTCAACTACCGCAAGGACGGCACGCCCTTCTGGAACATGCTCACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATCAAGTTCATCGGgtaacccatgcgacctatctatc--ttatcctc-ttgctgtactg---tttactctgctttgtgattcatggaactgccgtgacag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66923581|gb|CX110429.1|CX110429
EST:     ACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATCAAGTTCATCGG                         GATGCAGGTGGAGGTGAGCAAGTACACGGAGGGGCTCAGCGACAAGCGGAT
genomic: ACCGTCACCCCCATCCGCGACGACAACGGCAAGGTCATCAAGTTCATCGGgtaagtaagc ... gagcgaacagGATGCAGGTGGAGGTGAGCAAGTACACGGAGGGGCTCAGCGACAAGCGGAT