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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATTATTACAACAACTATAGAAGGTTCGCTACAGGGGGTTTAGCAGGTCAAGTACTTGTGCTGACAAAAAAGTCGTGGGGAGGTGGCTACCATAAAAAGgtgcacttcttctcattgtcctacaagaaaatcaaattgatctggtgatttcaaatggttgtgtgagtctccttacatacag

Basic information

species Oryza sativa
transcript LOC_Os04g11880.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 2
---TAATTATTACAACAACTATAGAAGGTTCGCTACAGGGGGTTTAGCAGGTCAAGTACTTGTGCTGACAAAAAAGTCGTGGGGAGGTGGCTACCATAAAAAGgtgcacttcttctcattgtcctacaagaaaatcaaattgatctggtgatttcaaatggttgtgtgagtctccttacatacag--------
   |||||||  |   ||||||||||| || ||||| || ||||||||||| |||||||||||||||||||| ||||| |||||||||   |||||||| |||||    ||  | || ||    ||  ||   |||  ||  |||  ||||  || ||||| |  |    |||| |     |  |        
CCCTAATTATGCCCGGAACTATAGAAGATTTGCTACTGGTGGTTTAGCAGGCCAAGTACTTGTGCTGACAAAGAAGTCTTGGGGAGGT---TACCATAAGAAGgtaagtttggtttccttaggataatag---atctgatgcatccagtgacctctaatggcta-gcacatctcttgcttgatggttatgtag