1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacagccaccccccacctcctcccctttccgccttgctctttgcctttgcttggcttggctgattgtgccgcctctaccgctgctcttttgctac...
species | Oryza sativa |
transcript | LOC_Os04g05080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|313079217|gb|HO663798.1|HO663798
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACACAGTGACTGGGTTTCTT-TTGGCTGGAGTTGGCAATGTTGATCTGAGEST: gi|112786061|gb|EE591978.1|EE591978
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTT-TAGTTGGCTGGAGTTGGCAATGTTGATCTGAG
EST: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|33659484|gb|CF282097.1|CF282097
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTNTGCGCTCATCGCCATCATCGCCGACGAG GACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGEST: gi|33659483|gb|CF282096.1|CF282096
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGEST: gi|33809423|gb|CF330591.1|CF330591
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATTCTGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACTCTGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|55437989|gb|CV732288.1|CV732288
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAG GACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
genomic: CCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacag ... gtgtttgcagGACACGGTGACTGGGTTTTAGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGgtagttacagccaccccccacctcctcccctttccgccttgctctttgcctttgcttggcttggctgattgtgccgcctctaccgctgctcttttgctac
- - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcctc