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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTGCGTCCGGTAACATACCTAAGTGGTGCACAGGGTTCTGGGAATGACATTCCTCATGGTTACATCTGGAGTCCTCACCTTGTTCCAAAACCGAAAGgttcctgatgagtattagctttatctgaaatttatatgttatcccttttcacgtcatgcttaaccttgtcatccttcgattgtatagtttttaaaacttg...

Basic information

species Oryza sativa
transcript LOC_Os04g04240.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g04254.1 (Oryza sativa), 5'ss of exon 8
lower sequence: PP1S110_116V6.1 (Physcomitrella patens), 5'ss of exon 10
AAGTTGCGTCCGGTAACATACCTAAGTGGTGCACAGGGTTCTGGGAATGACATTCCTCATGGTTACATCTGGAGTCCTCACCTTGTTCCAAAACCGAAAGgttcctgatgagtattagctttatctgaaa--tttatatgttat---cccttttcacgtc---atgctta----accttgt---catccttcgattgtatagtttttaaaacttg---------------------------------------------------------------------
||| | || ||  | || ||| | |||||| | ||||| ||       ||| | |||   || || || ||||||||||| |||||||| ||||||||||||||   |  | |     | | | |||| |  || | ||||| |   |  || | ||| |   ||| | |    |  ||||   ||||     ||   ||  || ||    ||                                                                       
AAGCTACGACCCATCACCTACTTGAGTGGTTCTCAGGGCTCCATCGCCGACTTGCCTACAGGATATATTTGGAGTCCTCATCTTGTTCCTAAACCGAAAGgttcg-aactattcacctcctcacctgatacgttcaaatgtttttgacaattgttacgccgatatgttgattgcaaattgtgcacatcagataatccgattattcttgcgtctgattttattagtttgtgacaattgagtgctgaaattatcaggattcttacgaggacgtctcacttttacag