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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtcaccttccttgttcattttttagttcaatggtgtctactaggctaactaaacagagaaatggaaactataaggaaaatattcaggcacttag...

Basic information

species Oryza sativa
transcript LOC_Os04g02900.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g02900.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G033894_T01 (Zea mays), 5'ss of exon 2
GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtcaccttccttgttcattttttagttcaatggtgtctactaggctaactaaacagagaaatggaaactataaggaaaatattcaggcacttag---
||||||||||||||||||||||| || || || || |||||||| || ||| ||||| | || || || ||||| || ||||||||||||||||  |||||||||| | || |||||  ||   | |||  ||  ||    |||  |  |||   |||| |  ||  |      ||| |   |      | | |         
GAGAGGGCAAGGAGAGGTGAAGGGCCAACCCTAGTCGAGTGTGAAACATACAGGTTCCGGGGTCACTCCCTTGCAGACCCAGATGAGCTCAGGAAGCCTGgtaaggattactttcctgtttggctgtttcattttat---ttctgttctgcttcataaagaatgatgtttctggtatgaaccaggctaactgactggagaaat

upper sequence: LOC_Os04g02900.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ29991 (Selaginella moellendorffii), 5'ss of exon 3
GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtcaccttccttgttcattttttagttcaatggtgtctactaggctaactaaacagagaaatggaaactataaggaaaatattcaggcacttag
| ||||||  |||||||||| || ||||| ||||| |||||||||||||||||||  ||||| |||||||| || || || || |||||| |||  |||||||||  |     | ||  ||| |||||| ||  | |    |||      ||  | |  |  ||   | |   || |        | | |||        
GCGAGGGCCCGGAGAGGTGACGGCCCGACGCTTGTCGAGTGTGAGACTTACCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttgttattctc-ttcgtttttt-gtggagtttcttctttggttctttcgaggctaagcttttgct-cttttttctttctttccag--------

upper sequence: LOC_Os04g02900.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ25051 (Selaginella moellendorffii), 5'ss of exon 2
GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtcaccttccttgttcattttttagttcaatggtgtctactaggctaactaaacagagaaatggaaactataaggaaaatattcaggcacttag
| ||||||  |||||||||| || ||||| ||||| |||||||||||||| ||||  ||||| |||||||| || || || || |||||| |||  |||||||||  |     | ||  ||| |||||| |      | |   |  | || |   |  |     |  |        |          |||  |       
GCGAGGGCCCGGAGAGGTGACGGCCCGACGCTTGTCGAGTGTGAGACTTATCGGTATAGAGGCCATTCTCTCGCCGACCCGGACGAGCTCCGGAAGCCTGgtaagttttgttattctc-ttcgtttttttg----gagtttcttctttggttctttggaggctaagcttttgctcttttttctttctttccag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86491775|gb|CI134408.1|CI134408
EST:     GGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: GGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89194316|gb|CI116753.1|CI116753
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89167371|gb|CI252902.1|CI252902
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|87041531|gb|CI196153.1|CI196153
EST:     CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCGAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89194198|gb|CI116635.1|CI116635
EST:     TTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: TTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88993814|gb|CI112718.1|CI112718
EST:     GGGCATTCTCTGGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: GGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88252126|gb|CI350554.1|CI350554
EST:     CTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCCCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|29642899|gb|CB647906.1|CB647906
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89184548|gb|CI006973.1|CI006973
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|38470054|gb|CF954185.1|CF954185
EST:     CCGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88978642|gb|CI384983.1|CI384983
EST:     CCAGATGAGCTCA-GAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89174637|gb|CI110835.1|CI110835
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88903269|gb|CI088807.1|CI088807
EST:     CAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88245227|gb|CI245076.1|CI245076
EST:     CCGGTTCAGA-GGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88197613|gb|CI197463.1|CI197463
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCCAAGGGACCCCATTACAGCCTTGAAGAAG
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCG-CAAGGGACCCCATTACAGCCTTGAAGAAG
EST: gi|86599451|gb|CI251409.1|CI251409
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88197314|gb|CI197164.1|CI197164
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|58599245|gb|CK009773.1|CK009773
EST:     CCGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGGGGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|38471168|gb|CF955299.1|CF955299
EST:     CCGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86433796|gb|CI094139.1|CI094139
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86895328|gb|CI331243.1|CI331243
EST:     GATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGC-AGGGACCCCATTACAGCCTTGAAGAAGT
genomic: GATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|58695360|gb|CK084047.1|CK084047
EST:     CCGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86504416|gb|CI147049.1|CI147049
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89167378|gb|CI252909.1|CI252909
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|89181296|gb|CI112802.1|CI112802
EST:     TTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: TTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86839421|gb|CI339360.1|CI339360
EST:     GCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: GCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86593428|gb|CI258068.1|CI258068
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTTAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88833967|gb|CI077448.1|CI077448
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86433555|gb|CI093898.1|CI093898
EST:     TGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: TGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88247251|gb|CI247100.1|CI247100
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|58668044|gb|CK056730.1|CK056730
EST:     CCGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|33381824|gb|CF197167.1|CF197167
EST:     CGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGANG-CCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAG
genomic: CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGA-GACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAG
EST: gi|86823242|gb|CI254094.1|CI254094
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|29662728|gb|CB659003.1|CB659003
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88243175|gb|CI244297.1|CI244297
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86413876|gb|CI068083.1|CI068083
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|87040486|gb|CI195108.1|CI195108
EST:     CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCGAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|58692875|gb|CK081562.1|CK081562
EST:     CGGTTCAGAGGACATTCTCTTGCTGATCCAGATGAGCTCAGGA-AGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAG
genomic: CGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGA-CCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAG
EST: gi|58688557|gb|CK077244.1|CK077244
EST:     TCTCTTGCTGAT-CAGATGAGCTCAGGAGGCCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: TCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86488673|gb|CI131306.1|CI131306
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88246680|gb|CI246529.1|CI246529
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|66920516|gb|CX107364.1|CX107364
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|29657214|gb|CB653489.1|CB653489
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88989364|gb|CI043863.1|CI043863
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88215230|gb|CI215079.1|CI215079
EST:     TTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTGCAGCCTTGAAGAAGT
genomic: TTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|86866227|gb|CI336887.1|CI336887
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
EST: gi|88247576|gb|CI247425.1|CI247425
EST:     CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTG                         ATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT
genomic: CCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 91

GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtca ... ttgtgcacagATGAGAAATCTCATTACGCCGCAAGGGACCCCATTACAGCCTTGAAGAAGTACATCATCGAACAGAACCTTGCAACTGAATCCGAGCTGAAGAGCATCGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAGGGCAAGGAGAGGTGAAGGACCGACTCTTGTGGAGTGTGAGACTTACCGGTTCAGAGGGCATTCTCTTGCTGATCCAGATGAGCTCAGGAGACCTGgtaagggtcaccttccttgttcattttttagttcaatggtgtctactaggctaactaaacagagaaatggaaactataaggaaaatattcaggcacttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccttcc