1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGCATTGGTTTTGCTATTGGATGTTGGCCCATCCATGCATGGCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacacactatttccattttaacttcccagatgcaaatgctactacctggccacctgcaattcatcataacttgtaaccaatcagcctcaagctaacccccctgccttttcccccctctctgcag
species | Oryza sativa |
transcript | LOC_Os03g63920.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAEST: gi|88728604|gb|CI752114.1|CI752114
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAEST: gi|88722274|gb|CI745784.1|CI745784
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTEST: gi|86904459|gb|CI308669.1|CI308669
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTT
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAEST: gi|86909601|gb|CI304706.1|CI304706
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAEST: gi|88372362|gb|CI619692.1|CI619692
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCATTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAEST: gi|88314922|gb|CI609981.1|CI609981
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
EST: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAG CTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
genomic: GCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacac ... ctctctgcagCTAGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCATTGGTTTTGCTATTGGATGTTGGCCCATCCATGCATGGCGTTCTGCAAGAAGTTGAGAATATCTGCTCCACCCTTGTGCATAAGAAGgcaagcacacactatttccattttaacttcccagatgcaaatgctactacctggccacctgcaattcatcataacttgtaaccaatcagcctcaagctaacccccctgccttttcccccctctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG