Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCCTGGAAGACGCTCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctctcgtcctctcctatctttggacttcgtttagtagttctagttgaattactagctgtatttagctatctaactgatatcttcaaagttatac...

Basic information

species Oryza sativa
transcript LOC_Os03g63430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63430.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G014116_T02 (Zea mays), 5'ss of exon 2
CGCCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCCTGGAAGACGCTCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctctcgtcctctcctatctt---tggacttcgtttagtagttctagttgaattactagctgtatt--tagctatctaactgatatcttcaaagttatac
|| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||| || |||||||| ||||||||||||||||||| |||||||     ||    |||    | || || ||  || |   |  || || ||||||    ||      |    |    |    | |  |||      
CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTATCTAAGAGGAGAGGCCAGCTTAAGCAGgtcaggctctcgagaattcacggcttgctcgtacatctttcggttgggtttttttaactactagaaagataggcgccgggattcgcggcgccctgtaagc-----

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G013750_T03 (Zea mays), 5'ss of exon 2
CGCCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCCTGGAAGACGCTCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctctcg-----tcctctccta--tctttggacttcgtttagtagttctagttgaattactagctgtattt-agctatctaactgatatcttcaaagttatac
|| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||||| |||||||||||||||||   | |||||     ||  | |||   ||||    |  |||||  |  || | ||  ||| | ||  ||| | | ||     | |  | ||  ||           
CGTCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCGTGGAAGACGCTAAACGACCAGATCGTTCTCCTCTCCAAGAGGAGAGGCCAGCTTAAGCAGgttcggttctcgagaattcaccgccttgctcttacatccccgttttttttttttggtgtaatcagtatatgtgtatgagaccctttagaggtactttagt--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88395216|gb|CI609532.1|CI609532
EST:     TCAATGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGGCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACTGCC
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAAC-GCC
EST: gi|88313821|gb|CI597452.1|CI597452
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|5002920|gb|AU068029.1|AU068029
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86420511|gb|CI056500.1|CI056500
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86902652|gb|CI306455.1|CI306455
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88736418|gb|CI759926.1|CI759926
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCC
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCC
EST: gi|88423710|gb|CI617062.1|CI617062
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGGCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86909145|gb|CI302756.1|CI302756
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88350957|gb|CI620617.1|CI620617
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88358952|gb|CI619456.1|CI619456
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|33803131|gb|CF327436.1|CF327436
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88453223|gb|CI565665.1|CI565665
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88729029|gb|CI752539.1|CI752539
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAA
EST: gi|58685186|gb|CK073873.1|CK073873
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88265103|gb|CI368877.1|CI368877
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88390520|gb|CI607556.1|CI607556
EST:     CAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCC
genomic: CAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGC-TTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCC
EST: gi|88721106|gb|CI744405.1|CI744405
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29664482|gb|CB660757.1|CB660757
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88727030|gb|CI750685.1|CI750685
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58658268|gb|CK046948.1|CK046948
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88765766|gb|CI774860.1|CI774860
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88396058|gb|CI595606.1|CI595606
EST:     TCAACGATCAGATCGTGGTCCTCTC-AAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTA
EST: gi|88210956|gb|CI212596.1|CI212596
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58659791|gb|CK048471.1|CK048471
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAA
EST: gi|58694542|gb|CK083229.1|CK083229
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88351878|gb|CI624683.1|CI624683
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGAAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88743570|gb|CI767078.1|CI767078
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58681237|gb|CK069924.1|CK069924
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|33656126|gb|CF278740.1|CF278740
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88421763|gb|CI621407.1|CI621407
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29645307|gb|CB650314.1|CB650314
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|33795887|gb|CF323811.1|CF323811
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88362669|gb|CI608818.1|CI608818
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTG
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTG
EST: gi|58666529|gb|CK055215.1|CK055215
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29658196|gb|CB654471.1|CB654471
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29664785|gb|CB661060.1|CB661060
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88745248|gb|CI768608.1|CI768608
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58607299|gb|CK035332.1|CK035332
EST:     CAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAAGCAG                         GCTATCACTGGCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCC
genomic: CAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAA-GCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCC
EST: gi|88734878|gb|CI758386.1|CI758386
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58659555|gb|CK048235.1|CK048235
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58593588|gb|CF991896.1|CF991896
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29639941|gb|CB644950.1|CB644950
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58679603|gb|CK068290.1|CK068290
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29678374|gb|CB674649.1|CB674649
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|58678571|gb|CK067258.1|CK067258
EST:     ACGATCTGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: ACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88359647|gb|CI622337.1|CI622337
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88741963|gb|CI765471.1|CI765471
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86495227|gb|CI137860.1|CI137860
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|29637544|gb|CB642553.1|CB642553
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88315854|gb|CI617327.1|CI617327
EST:     TCAA-GATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|117217926|gb|CT845200.1|CT845200
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88454338|gb|CI569910.1|CI569910
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88400598|gb|CI596019.1|CI596019
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86534283|gb|CI174489.1|CI174489
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|86894782|gb|CI310174.1|CI310174
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88404353|gb|CI578230.1|CI578230
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATT
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATT
EST: gi|88744578|gb|CI767938.1|CI767938
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
EST: gi|88390672|gb|CI609297.1|CI609297
EST:     TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAG                         GCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA
genomic: TCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctct ... atttttacagGCTATCACTGCCATGGTTCAGAAAGCAATGGAGTACATTGACTTAACGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCATCGACATCGTCGAGCTCTGCTACAAGGCCGGCGCCTGGAAGACGCTCAACGATCAGATCGTGGTCCTCTCCAAGAGGAGGGGCCAGCTTAAGCAGgtcaagctctcgtcctctcctatctttggacttcgtttagtagttctagttgaattactagctgtatttagctatctaactgatatcttcaaagttatac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG