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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttgacttatggaacacttcatctttctccttttaaaatattccgcactctactgtatagagtatagtggtctttgccttcctgaactgttcgcag

Basic information

species Oryza sativa
transcript LOC_Os03g62640.2
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88303324|gb|CI668972.1|CI668972
EST:     GTGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88730423|gb|CI754036.1|CI754036
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATT
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATT
EST: gi|88335728|gb|CI647084.1|CI647084
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGA
EST: gi|29623140|gb|CB628151.1|CB628151
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88453917|gb|CI686516.1|CI686516
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTC
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTC
EST: gi|88410947|gb|CI569066.1|CI569066
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88365385|gb|CI680019.1|CI680019
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88454050|gb|CI691097.1|CI691097
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATCCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAG
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAG
EST: gi|29623911|gb|CB628922.1|CB628922
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29661287|gb|CB657562.1|CB657562
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29630312|gb|CB635321.1|CB635321
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29624088|gb|CB629099.1|CB629099
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29681987|gb|CB678262.1|CB678262
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88356806|gb|CI619292.1|CI619292
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88369068|gb|CI677565.1|CI677565
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88501855|gb|CI696966.1|CI696966
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACT
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACT
EST: gi|88326755|gb|CI675455.1|CI675455
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88447808|gb|CI577004.1|CI577004
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88692989|gb|CI736564.1|CI736564
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAA
EST: gi|29672226|gb|CB668501.1|CB668501
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88428443|gb|CI564911.1|CI564911
EST:     TGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATTGGGAACTCGA
genomic: TGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAG-CTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88324649|gb|CI568268.1|CI568268
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29679242|gb|CB675517.1|CB675517
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88390601|gb|CI609226.1|CI609226
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88386151|gb|CI570786.1|CI570786
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAA
EST: gi|88349256|gb|CI678231.1|CI678231
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88690480|gb|CI734559.1|CI734559
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88299913|gb|CI579974.1|CI579974
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29627005|gb|CB632016.1|CB632016
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29635022|gb|CB640031.1|CB640031
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88421188|gb|CI567029.1|CI567029
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88571157|gb|CI662530.1|CI662530
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88399642|gb|CI583376.1|CI583376
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88717451|gb|CI740961.1|CI740961
EST:     GGATCTCGGGCCTTGCCCNCAAAGTTCATTCGCCGCACCCTACGGAAGGA                         TTATGAAGAAGTAACGGCAAAAGGAACAGAAA
genomic: GGATCTCGGGCCTTGCCC-CAAAGTTCATTCGCTGCAGC-TACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAA
EST: gi|88307637|gb|CI644673.1|CI644673
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88664912|gb|CI705124.1|CI705124
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGG
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGG
EST: gi|88851477|gb|CI670917.1|CI670917
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88664233|gb|CI673738.1|CI673738
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29681845|gb|CB678120.1|CB678120
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88501824|gb|CI696607.1|CI696607
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29681724|gb|CB677999.1|CB677999
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88318144|gb|CI629425.1|CI629425
EST:     ATGGATCTCGGGCCNTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88572570|gb|CI664141.1|CI664141
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29678406|gb|CB674681.1|CB674681
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88664349|gb|CI687722.1|CI687722
EST:     ATGGATCTCGGGCCTTGCCCCCAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAANAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88665290|gb|CI710762.1|CI710762
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGAT
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGAT
EST: gi|29629756|gb|CB634765.1|CB634765
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88591376|gb|CI707406.1|CI707406
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGA
EST: gi|88399909|gb|CI585828.1|CI585828
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29680593|gb|CB676868.1|CB676868
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88373223|gb|CI614559.1|CI614559
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAACAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29674493|gb|CB670768.1|CB670768
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88369079|gb|CI678107.1|CI678107
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88294392|gb|CI667366.1|CI667366
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAAT
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAAT
EST: gi|29664072|gb|CB660347.1|CB660347
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88341326|gb|CI640083.1|CI640083
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88690153|gb|CI734232.1|CI734232
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|86898213|gb|CI290816.1|CI290816
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29660244|gb|CB656519.1|CB656519
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88395418|gb|CI611335.1|CI611335
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29636080|gb|CB641089.1|CB641089
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29639321|gb|CB644330.1|CB644330
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88290522|gb|CI666895.1|CI666895
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAA
EST: gi|29629579|gb|CB634588.1|CB634588
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88337866|gb|CI676839.1|CI676839
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29617712|gb|CB622724.1|CB622724
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29665628|gb|CB661903.1|CB661903
EST:     ATGGATCTCGGGCCTTGCCCCAAAGGTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88333533|gb|CI656605.1|CI656605
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAAC
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAAC
EST: gi|88745532|gb|CI768892.1|CI768892
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGA
EST: gi|29629757|gb|CB634766.1|CB634766
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88586590|gb|CI704296.1|CI704296
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGG
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGG
EST: gi|88737214|gb|CI760722.1|CI760722
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAG
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAG
EST: gi|29674744|gb|CB671019.1|CB671019
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29678347|gb|CB674622.1|CB674622
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88310147|gb|CI657571.1|CI657571
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGAT
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGAT
EST: gi|29626366|gb|CB631377.1|CB631377
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88578863|gb|CI687818.1|CI687818
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88367212|gb|CI563976.1|CI563976
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|88372441|gb|CI610764.1|CI610764
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29656040|gb|CB652315.1|CB652315
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCCA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA
EST: gi|29633031|gb|CB638040.1|CB638040
EST:     ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGA                         TTATGAAGAAGTAAAGGCTAAAGGAACAGAAAATTATGATAGGGAACTCGA
genomic: ATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttg ... ctgttcgcagTTATGAAGAAGTAAAGGCAAAAGGAACAGAAAATTATGATAGGGAACTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATGGATCTCGGGCCTTGCCCCAAAGTTCATTCGCTGCAGCTACGGAAGGAgtatcctttgacttatggaacacttcatctttctccttttaaaatattccgcactctactgtatagagtatagtggtctttgccttcctgaactgttcgcag

- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - GCAGCT