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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcagctttgctccatctgcatcagtgcttgccttgccttcgccgcttcgattgaatggctccgttcttgcgtgtgtgtgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os03g61010.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g61010.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G121826_T01 (Zea mays), 5'ss of exon 2
GCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcagct------------ttgctccatctgcatcagtgcttgccttgccttcgccgcttc-gattgaatggctccgttcttgcgtgtgtgtgtgtgcag
||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||| ||||||||||| ||            | | |  |||        || | | |||||||  || || || |||||||||||| |||      |||   ||| ||||||
GCCCAACGTGGTCTACCGCGGCACGCTCTTCAGCTCCGGCCGCACCGTCGCCATCAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGACAGTTCCTGgttcgtgcaactggctcagtgtgatggatggatcgtttcttatgttcgtcttgcctctgcggcgtctgattgaatggctgcgt------gtgcccgtgggtgcag

upper sequence: LOC_Os03g61010.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G177445_T01 (Zea mays), 5'ss of exon 2
GCCCAACGTCGTCTACCGCGGCACCCTCTTCAGCACCGGCCGCACCGTGGCCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcagctttgctccatctgc------atcagtgcttgccttgccttcgccgcttcgattgaatggctccgttcttgcgtgtgtgtgtgtgcag
 |||||||| |||||||| ||||| ||||||||| ||||||||||||| || || ||||||||||||||||| |||||||| ||||| ||||||||| |||| |||| | | ||||||||| ||       |||  | |||   ||    | ||  || ||   |  ||  |   |   || |  |  ||| ||||||
ACCCAACGTGGTCTACCGTGGCACGCTCTTCAGCTCCGGCCGCACCGTCGCTATTAAGCGCTTCGGCCGCTCCGCCTGGCCGGACTCACGCCAGTTCCTGgtccgtgta-ccttgctccatgtgatggatgatcgttacttatgttcgtcttgcttctgcggc-ggctgattgaatggctgtgcctccgtgggtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58612070|gb|CK039782.1|CK039782
EST:     CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTG                         GAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
genomic: CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcag ... gtgtgtgcagGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
EST: gi|88362294|gb|CI608685.1|CI608685
EST:     CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTG                         GAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
genomic: CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcag ... gtgtgtgcagGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
EST: gi|58667566|gb|CK056252.1|CK056252
EST:     CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTG                         GAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
genomic: CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcag ... gtgtgtgcagGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
EST: gi|58686808|gb|CK075495.1|CK075495
EST:     CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTG                         GAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
genomic: CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcag ... gtgtgtgcagGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
EST: gi|58668832|gb|CK057518.1|CK057518
EST:     CCATCCAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTG                         GAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG
genomic: CCATCAAGCGCTTCGGCCGCTCTGCCTGGCCCGACTCCCGCCAGTTCTTGgttcgtgcag ... gtgtgtgcagGAGGAGGCGAGGGCTGTCGGGCAGCTGCGGAGTGTCCGGCTGGCCAACCTG