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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt...

Basic information

species Oryza sativa
transcript LOC_Os03g60870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G473906_T03 (Zea mays), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatcc----atcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgc-atgtcaccattgcgttcgatgcattt
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||   ||  ||| |    |||      | | |  |   |    | |    || | | | |||          ||  |  |||| || |   |      || |   
CGTCGGCAAGTCCAACATCCTCTCCCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCCTGCAGgtaaacccacccgca-atgatttgaagaacgttctagtttataagtcgttttgacatttgtaaatacacaacttctgttatgtaactag-acaaatagtgta---

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G144008_T01 (Zea mays), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtc---accattgcgttcgatgcattt
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||   ||  | | | | |   ||       |||| |  ||  | ||   ||   ||   | |   | |||  ||  ||    ||   || |   |  || |||
CGTCGGCAAGTCCAACATCCTTTCCCGGTTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCACCCTCCAGgtaagcccactccctccccgccctcgaatctctccctagatgaggg---agtcgagagatttattgcattcggcgggttcatactgctggggctggggcgttt

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G06280.2 (Glycine max), 5'ss of exon 1
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgt--tggggatttcgcatgtcaccattgcgttcgatgcattt
 || ||||| ||||||||||||||  | ||||| || |||||||||||  | |||||||| ||||| || || || |||||||||||| | || || |||||     | |   |      |        || | ||  || |       |        || |  || |||    |    | |    |  | |||  |     
TGTAGGCAAATCCAACATCCTCTCCAGGTTCACTCGAAACGAGTTCTGTTTGGAGTCCAAATCCACTATCGGAGTTGAGTTCGCCACCAGAACTCTTCAGgtagatatgcttccctttactttgctgatttttttcaagattcctaagaaattcttcggtttcttgcggaagcagatgattattcatctgctcgtagtga--

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G07410.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt--
 || || || |||||||| ||||| ||||||||| | ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| ||  | ||||||  |  ||  || | || |   ||    |||    | | |    | ||||  | |   ||     || |   ||     | | || || |   | | |  
TGTTGGTAAATCCAACATTCTCTCTCGATTCACCAGAAACGAGTTCTGTCTCGAATCCAAATCCACCATTGGCGTCGAATTCGCCACCCGGACTTTACAGgtcatctctct-tctctcgctttctctaaatctag-acaatttccctccagatcaatttggtgtttaatcttagattgtgtcgtcgcatttgcatcctctga

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP04353 (Chlamydomonas reinhardtii), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt
|||||||||||||||  | ||||| || |||||  | || |||||| |||||||||||||||| ||||||||||| |||||||| || ||||   | ||||     ||  |   ||  ||       |      ||  | | || |  || ||| |   |||||     |  |||                         
CGTCGGCAAGTCCAATCTGCTCTCCCGTTTCACGAGGAATGAGTTCAGCCTCGAGTCCAAGTCTACCATTGGCGTGGAGTTCGCGACTCGCAGCATTCAGgcaaggctatct--gcaagagaggatttgactggtcatggccattga-caaaat-gcgctgttgct--ctgagcag------------------------

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S209_94V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt---
 || || ||||||||  | || ||  |||| || || |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||  |  |||||||  |      | || ||   | || |  |  ||  | |     ||||  |    |  | | | |    |    | ||    | |     ||| |        
TGTGGGGAAGTCCAATCTGCTTTCCAGATTTACGCGGAACGAGTTCTGCCTGGAGTCGAAGTCGACCATTGGCGTGGAGTTTGCCACTCGATCTATCCAGgtatcgtccggcccgtgctggc-atgcaatg-tcgtgagggcggggtttggtgcggctgcggtcgaagctgtagaggt-gtgactagaagcgagggtccgggg

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S84_180V6.1 (Physcomitrella patens), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgt--cccccttccctcgcgcgatccatcctcttctctcgcgactatggt-tcagaatagtagtgttggggatttcgcatgtc-accattgcgttcgatgcattt
 || || ||||||||  | || ||  ||||||| || |||||||| || || ||||| ||||| ||||| ||||| ||||||||||| ||| |  | |||||     |||      | |  || || | |  ||| |   || |  | |  ||   | ||  | |||| |     | ||||  | |||    |  ||   | | 
TGTTGGGAAGTCCAATCTGCTTTCCAGATTCACGCGGAACGAGTTTTGTCTAGAGTCGAAGTCGACCATCGGCGTGGAGTTCGCCACTCGCTCCATTCAGgtaatatcctcgttcaggggcatgcaacgtgctctttacggattgagctgccacgctggttcttttggtgg---agaatgtagagcatactttaagagatagt-

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S21_298V6.2 (Physcomitrella patens), 5'ss of exon 2
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcg----atccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt
 || || ||||||||  | || ||  |||| || || ||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||| |  | |||||  |      ||   |      ||  | ||| | ||      | ||| | |  || |  |  ||| | || | | | |||   |  | |     |||      
TGTTGGAAAGTCCAATCTGCTTTCCAGATTTACTCGTAACGAGTTCTGTCTGGAGTCCAAGTCGACCATTGGCGTGGAGTTCGCCACTCGCTCCATTCAGgtatcatccgtctgctgtagtaaatgtaccctttcctgagttaattatcgctgtgactctttctgtagagggtgttg-atgatgcattaggagaggatatt---

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ06060 (Selaginella moellendorffii), 5'ss of exon 1
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt
|||||| || |||||| | |||||  ||||||| |||||||||||||||||||||||||| ||||| || || ||||| ||||| || |||||| |||||||  |       || | |  ||| || | |    || | | | |  |||    || | ||| ||| | | |  |  | |   || |   || |       
CGTCGGGAAATCCAACTTGCTCTCCAGATTCACGCGCAACGAGTTCTGCCTCGAGTCCAAATCCACAATCGGGGTCGAATTCGCGACGCGCACGATCCAGgtaacaaagaattctctctttccctcttttctcatctcaaat-tccttctttcta-tggtggtggtgttcttcccggacgg-atggaactctag------

upper sequence: LOC_Os03g60870.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ30172 (Selaginella moellendorffii), 5'ss of exon 1
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt
|||||| || |||||| | |||||  ||||||| |||||||||||||||||||||||||| ||||| || || ||||| ||||| || |||||| |||||||  |       || | |  ||| || | |    || | | | |  |||    || | ||| | | | | |  |  | |   || |   || |       
CGTCGGGAAATCCAACTTGCTCTCCAGATTCACGCGCAACGAGTTCTGCCTCGAGTCCAAATCCACAATCGGGGTCGAATTCGCGACGCGCACGATCCAGgtaacaaagaattctctctttccctcttttctcatctcaaat-tccttctttcta-tggtggttgtgttcttcccggacgg-atggaactctag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576463|gb|CA999157.1|CA999157
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|2311363|gb|C27518.1|C27518
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTTCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88574863|gb|CI666632.1|CI666632
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88345280|gb|CI633924.1|CI633924
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88336464|gb|CI656735.1|CI656735
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGG
EST: gi|88400858|gb|CI616863.1|CI616863
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|33817241|gb|CF334457.1|CF334457
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCATGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88294387|gb|CI667361.1|CI667361
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88340056|gb|CI650503.1|CI650503
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88353834|gb|CI634625.1|CI634625
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|29679600|gb|CB675875.1|CB675875
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88346809|gb|CI657360.1|CI657360
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|87023728|gb|CI286479.1|CI286479
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88308042|gb|CI647869.1|CI647869
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|117251478|gb|CT844183.1|CT844183
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGAAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|66928338|gb|CX115186.1|CX115186
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|95101677|gb|CI692605.1|CI692605
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88357985|gb|CI650721.1|CI650721
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|88735965|gb|CI759473.1|CI759473
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGA
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGA
EST: gi|88576064|gb|CI670209.1|CI670209
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|29679599|gb|CB675874.1|CB675874
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
EST: gi|27576669|gb|CA999363.1|CA999363
EST:     TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAG                         ATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG
genomic: TCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttc ... atgtatacagATAGAAGGGCAGACCATCAAAGCTCAGATATGGGATACTGCTGGGCAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGGCAAGTCCAACATCCTCTCGCGATTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGCACGCTCCAGgtcccccttccctcgcgcgatccatcctcttctctcgcgactatggttcagaatagtagtgttggggatttcgcatgtcaccattgcgttcgatgcattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc