1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgattgaaacccctctagttaatatatagaatgtgattgtaaacttctgagctcatgctaatacttgctgtggtctgttag
species | Oryza sativa |
transcript | LOC_Os03g60740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGGGAGGGCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGEST: gi|33818132|gb|CF334892.1|CF334892
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|33818134|gb|CF334893.1|CF334893
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagG-TGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|3762111|gb|C99359.1|C99359
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|33686688|gb|CF314927.1|CF314927
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|32947908|gb|BP184480.1|BP184480
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|3762112|gb|C99360.1|C99360
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AGTTTTACTATGAAGATGGAATGTANCCTGACCAG GTGGATTGGATTGCCCAAAAGAATCAGATTGACACTGEST: gi|88395066|gb|CI609382.1|CI609382
genomic: AGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGTCAAAAGAATCAGATTGACACTGEST: gi|88308413|gb|CI650822.1|CI650822
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTCACTATGAAGATGGAATGTATCCTGAGCAC GTGGATTGGATTGGCCAAAAGAATCACATNGACACTEST: gi|33817947|gb|CF334802.1|CF334802
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACT
EST: ATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|117234788|gb|CT847886.1|CT847886
genomic: ATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|33821837|gb|CF336729.1|CF336729
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: GGGTGGGAGGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|33817945|gb|CF334801.1|CF334801
genomic: GG-TGGGAGG-CCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATT-GGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|42592251|gb|CK738737.1|CK738737
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGEST: gi|88576382|gb|CI670527.1|CI670527
genomic: AAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTG
EST: GGTGGGAGGCCCTGAGTTTTACTATGAAGATGGAATGTANTC-TGAGCAG GTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTG
genomic: GGTGGGAGGCC-TGAGTTTTACTATGAAGATGGAATGTA-TCCTGAGCAGgttggctgat ... ggtctgttagGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGgttggctgattgaaacccctctagttaatatatagaatgtgattgtaaacttctgagctcatgctaatacttgctgtggtctgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG