1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCGGATGACACGCCGTGGGATGGAGgtgagtccatttgacttttccccttattttgttctgatcaagatatctagttactagtgattgtgataatttggtgtttggtgaatgaaaaattaatgtt...
species | Oryza sativa |
transcript | LOC_Os03g57790.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGGATGAC-CGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|33797775|gb|CF324747.1|CF324747
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38479547|gb|CF963650.1|CF963650
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|4716198|gb|AU057314.1|AU057314
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|313080727|gb|HO213524.1|HO213524
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: TTCGGACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|86508354|gb|CI150987.1|CI150987
genomic: TTCGGACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ATATTCGGACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|11025772|gb|AU162373.1|AU162373
genomic: ATATTCGGACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|87030448|gb|CI252725.1|CI252725
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: TCATATTCGGACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|27576870|gb|CA999564.1|CA999564
genomic: TCATATTCGGACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38474625|gb|CF958758.1|CF958758
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|58688873|gb|CK077560.1|CK077560
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|27576883|gb|CA999577.1|CA999577
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|218500669|gb|FG957555.1|FG957555
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|27576871|gb|CA999565.1|CA999565
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|27577979|gb|CB000674.1|CB000674
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: GATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|3761950|gb|C99198.1|C99198
genomic: GATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCCAACAAACCAEST: gi|426691|gb|D22760.1|D22760
genomic: ACCGGATGACACG-CCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTAT-CCCAACAAACCA
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACANTTTACAGAAGATTATCCCAACAAACCACEST: gi|88220568|gb|CI220128.1|CI220128
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: CATATTCGGACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|8251184|gb|AU091335.1|AU091335
genomic: CATATTCGGACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|33795388|gb|CF323564.1|CF323564
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|58590675|gb|CF988983.1|CF988983
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38470097|gb|CF954228.1|CF954228
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|55411803|gb|CV724179.1|CV724179
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|58677295|gb|CK065982.1|CK065982
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38475004|gb|CF959137.1|CF959137
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|55409133|gb|CV721509.1|CV721509
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAT GTTTTTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACATTACCAEST: gi|2280796|gb|C25291.1|C25291
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACA-AACCA
EST: GATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|86419732|gb|CI054533.1|CI054533
genomic: GATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|425985|gb|D22670.1|D22670
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACANTTTACAGAAGATTATCCCAACAAACCACEST: gi|218485740|gb|FG958740.1|FG958740
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38482332|gb|CF966375.1|CF966375
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38480664|gb|CF964753.1|CF964753
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|8336757|gb|BE041059.1|BE041059
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38469192|gb|CF953323.1|CF953323
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCGCGAACAAACCEST: gi|38468296|gb|CF952427.1|CF952427
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCC-C-AACAAACC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38469613|gb|CF953744.1|CF953744
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38468844|gb|CF952975.1|CF952975
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|38481856|gb|CF965925.1|CF965925
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|218505167|gb|FG956727.1|FG956727
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|42592241|gb|CK738727.1|CK738727
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|29666285|gb|CB662560.1|CB662560
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACEST: gi|58585769|gb|CF984077.1|CF984077
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
EST: ACCGGATGACACGCCGTGGGATGGAG GCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
genomic: ACCGGATGACACGCCGTGGGATGGAGgtgagtccat ... tgtcacatagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGGATGACACGCCGTGGGATGGAGgtgagtccatttgacttttccccttattttgttctgatcaagatatctagttactagtgattgtgataatttggtgtttggtgaatgaaaaattaatgtt
- - - - - - - - - GATGGA