1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTTGGAAGAGGTAAATATAGTGAAGTCTTTGAAGGCATCAATGTTAACAACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaattgatcttattgactgttttttttaattgctagtgttgaagttcttaacctacctttcatatgtttgaacag
species | Oryza sativa |
transcript | LOC_Os03g55389.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATTEST: gi|58676233|gb|CK064920.1|CK064920
genomic: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaatt ... gtttgaacagATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATT
EST: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATTEST: gi|58679360|gb|CK068047.1|CK068047
genomic: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaatt ... gtttgaacagATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATT
EST: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATTEST: gi|218492474|gb|FG956256.1|FG956256
genomic: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaatt ... gtttgaacagATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATT
EST: TGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATTEST: gi|58687259|gb|CK075946.1|CK075946
genomic: TGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaatt ... gtttgaacagATCAAAAGGGAGATTAAAATACTTCAGAATCTTTGTGGAGGTCCAAACATT
EST: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAG ATCAAAAGGGAGATTAAAATACTTCAGAATCT
genomic: ACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaatt ... gtttgaacagATCAAAAGGGAGATTAAAATACTTCAGAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGGAAGAGGTAAATATAGTGAAGTCTTTGAAGGCATCAATGTTAACAACAATGAGAAATGCATCATCAAGATACTCAAGCCTGTGAAGAAAAAGAAGgtatttaattgatcttattgactgttttttttaattgctagtgttgaagttcttaacctacctttcatatgtttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG