1 5' 3' | 2 5' 3' | 3 5' 3' |
TACAAGTTCTGCTTCCATAATCCATATGGAGCACCTGAAACCGTTTCTTTCTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttctggtcttttaccttgaccttttcgcttgtcacagtctcatatctgcttatcacgtcaatttatttgttttgagcattgaatcacaatcagtttaatatgcgatcataggtttatatttggtatgttcattttatatttgcgtacataagctatatttggttgcttttgcag
species | Oryza sativa |
transcript | LOC_Os03g53310.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCATTGTGAAAATAGCGGAGCTGAAGGAAGCATTAGEST: gi|88207441|gb|CI207290.1|CI207290
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGEST: gi|186893005|gb|FG124690.1|FG124690
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTATEST: gi|58655955|gb|CK044635.1|CK044635
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGEST: gi|88973139|gb|CI717668.1|CI717668
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGEST: gi|88669486|gb|CI723404.1|CI723404
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAGEST: gi|58671392|gb|CK060078.1|CK060078
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
EST: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATG AGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
genomic: CTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttc ... gcttttgcagAGCACTTGGACCCTATCAATGTGAAAATAGCGGAGCTGAAGGAAGCATTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAGTTCTGCTTCCATAATCCATATGGAGCACCTGAAACCGTTTCTTTCTACATTCATGTTGGGCACATACCCAACGAGCACAATCTGGCAAAAGATGgttagtgttctggtcttttaccttgaccttttcgcttgtcacagtctcatatctgcttatcacgtcaatttatttgttttgagcattgaatcacaatcagtttaatatgcgatcataggtttatatttggtatgttcattttatatttgcgtacataagctatatttggttgcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG