1 5' 3' | 2 5' 3' | 3 5' 3' |
CGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttgaactttgatggatactttaatttgatgatctacagtatctgtttcccctttgccaaactagatttccaatatctgtctctgcaattgcattccatgcgtatcgcag
species | Oryza sativa |
transcript | LOC_Os03g53200.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATAATAGATTTTCAGGAGTTCCTGAGCCTCATTGCAAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|38472151|gb|CF956282.1|CF956282
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTTGAGGTCCTAGACAAGEST: gi|29667976|gb|CB664251.1|CB664251
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88329564|gb|CI650016.1|CI650016
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88299406|gb|CI572358.1|CI572358
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88341641|gb|CI641393.1|CI641393
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCCTAGACAAEST: gi|88310980|gb|CI657893.1|CI657893
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCC-TAGACAA
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACCAAGAGCTGAAAGAAGCTCTCCAGGTCCTAGACAAGEST: gi|88306356|gb|CI638139.1|CI638139
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88404677|gb|CI581113.1|CI581113
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGGTGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88827806|gb|CI778371.1|CI778371
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAEST: gi|88407027|gb|CI581114.1|CI581114
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTA
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGGTGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|58589123|gb|CF987431.1|CF987431
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTTGAGGTCCTAGACAAGEST: gi|88471830|gb|CI409101.1|CI409101
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAGEST: gi|88404667|gb|CI581103.1|CI581103
genomic: GATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
EST: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGGCAGGAAGGTGAAG GATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
genomic: GGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttg ... cgtatcgcagGATGGGGATGGCGACGAAGAGCTGAAAGAAGCTTTCGAGGTCCTAGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATCAGGAGCTCAACGACATGATGAGGGAAGTTGATACAGATGGCAATGGGATCATAGATTTTCAGGAGTTCCTGAGCCTCATTGCCAGGAAGATGAAGgtgaagcttgaactttgatggatactttaatttgatgatctacagtatctgtttcccctttgccaaactagatttccaatatctgtctctgcaattgcattccatgcgtatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG