1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCAACAGCTCCGGGGATGGCAAAGCATGCTGGAGCATACTGGCTCGATAGTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatacttcacacctctgtactcagtgcactggttagctagaaccacattgcagttagtgtaaaatgacagaagaaggataaggtaatctgaatga...
species | Oryza sativa |
transcript | LOC_Os03g52630.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAG GTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAAEST: gi|29639818|gb|CB644827.1|CB644827
genomic: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatac ... ctttattcagGTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAA
EST: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAG GTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAAEST: gi|396941140|gb|HO188349.1|HO188349
genomic: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatac ... ctttattcagGTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAA
EST: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAG GTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAAEST: gi|7593822|gb|AU066038.2|AU066038
genomic: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatac ... ctttattcagGTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAA
EST: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAG GTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAA
genomic: GTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatac ... ctttattcagGTTCTTCTGAGCAGGTTGCGGCTTTTCCTAAGTCCTGGATATCCTTACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAACAGCTCCGGGGATGGCAAAGCATGCTGGAGCATACTGGCTCGATAGTCCGAATTATGGAGTTTTTACCTGGGATGACAAGCTTCCAGGAGCTCAGgttagcatacttcacacctctgtactcagtgcactggttagctagaaccacattgcagttagtgtaaaatgacagaagaaggataaggtaatctgaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA