1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACAATTCATATGGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatcttctcgtgcttgtgtaaatattgatcggctcgcttatacttggcttctgttaaattttttgtag
species | Oryza sativa |
transcript | LOC_Os03g50620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGGTTCTACGG CTCTTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGGEST: gi|88304971|gb|CI671232.1|CI671232
genomic: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatct ... ttttttgtagATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGG
EST: TCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTNGTTCCTACNGG ATATTAGGGAGCTCATATCATTGGATGATGEST: gi|88695402|gb|CI737905.1|CI737905
genomic: TCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCT-GTTTCTAC-GGgtaaggatct ... ttttttgtagATATTAGGGAGCTCATATCATTGGATGATG
EST: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGG ATATTAGGGAGCTCATATEST: gi|58659859|gb|CK048539.1|CK048539
genomic: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatct ... ttttttgtagATATTAGGGAGCTCATAT
EST: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGG ATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGGEST: gi|29689065|gb|CB685340.1|CB685340
genomic: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatct ... ttttttgtagATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGG
EST: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGG ATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGG
genomic: GGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatct ... ttttttgtagATATTAGGGAGCTCATATCATTGGATGATGTCATGGAGGAACTTGGGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCCAGTTTGTATCAGCATTGTGAGACTGTGGGTAGGACAATTCATATGGTCAATCTCGATCCTGCTGCAGAGCACTTCAGCTACCCTGTTTCTACGGgtaaggatcttctcgtgcttgtgtaaatattgatcggctcgcttatacttggcttctgttaaattttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT