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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTGTGGGCTCCAACTGCGACAATTGTTTCGCCTCCAGAAACCTGAGGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactctgtccttcaactgttacacgcatttgatatgcagagacttgcttttgtgatcatgtgctgtgcggagactgttacatgcattatttatagtgattcctcttgctttcaatggtgtaacttttttggcgatatgttgctaccgcag

Basic information

species Oryza sativa
transcript LOC_Os03g49730.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49730.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G457881_T03 (Zea mays), 5'ss of exon 2
GATTTCTGTGGGCTCCAACTGCGACAATTGTTTCGCCTCCAGAAACCTGAGGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactctgtccttcaactgttacacgcatttgatatgcagagacttgcttttgtgatcatgtgct-gtgcggagactgttacatgcattatttatagtgattcctcttgctttcaatggtgtaacttttt-tggcgatatgttgctaccgcag
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GATTTTAGTTGGATCGAGCTGTGACCATTGTTTCACCTCTGGCAACCTGAGGAAGTGCTCTATGTGTCGAGTTACTTGGTACTGCAGCAGCAACTGTCAGgtgctggcaaaacctactctatatagcac---ttacatttcca-----tcgattgtgcaatcgtatgcttgtgtggttaat-tcacacacattttttttagtgatta-tcatgcttttgttatctttttttacaactgtaatatgttgttagtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669228|gb|CK057914.1|CK057914
EST:     GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAG                         AGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
genomic: GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactc ... gctaccgcagAGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
EST: gi|2428360|gb|C72823.1|C72823
EST:     GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAG                         AGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
genomic: GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactc ... gctaccgcagAGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
EST: gi|66922964|gb|CX109812.1|CX109812
EST:     GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAG                         AGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
genomic: GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactc ... gctaccgcagAGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
EST: gi|58655252|gb|CK043932.1|CK043932
EST:     GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAG                         AGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT
genomic: GGAAGTGCTCCGTTTGTCGAGTTGCTTGGTACTGTGGGAGTGCGTGTCAGgtgctgactc ... gctaccgcagAGAGAAGAATGGAAGCTTCATCAACTTGAATGTCGAGCAATCGCCGCGCTT