1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctcatctcaaaaagaaaaaaaaaatatgttctgttcaagcatgcaatacattgcggataaaaaccaaaaatgatagttgtgtagtcaggctaacctttcagattgtcaaattctgttcgcttactgatgcag
species | Oryza sativa |
transcript | LOC_Os03g49720.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGA-GGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTEST: gi|89165833|gb|CI102923.1|CI102923
genomic: CAA-ATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
EST: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTEST: gi|86511369|gb|CI154002.1|CI154002
genomic: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
EST: GAGCTTCTCTACACCACCTCAGAGTCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTEST: gi|88216834|gb|CI216436.1|CI216436
genomic: GAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
EST: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTEST: gi|38480203|gb|CF964292.1|CF964292
genomic: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
EST: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACTEST: gi|58589762|gb|CF988070.1|CF988070
genomic: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
EST: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAG AGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
genomic: GCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctc ... actgatgcagAGGCCAAAGTTTCTGAGGCCGTTTGGGACGATTTACCAAGCAATCAATACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGAGGTGAACCAAGTGAAGGAGCCACTCAAGTCTGATCTCCTCAACGGCAAATGGGAGCTTCTCTACACCACCTCAGAATCCATACTGCAACCACAGgtcccttctcatctcaaaaagaaaaaaaaaatatgttctgttcaagcatgcaatacattgcggataaaaaccaaaaatgatagttgtgtagtcaggctaacctttcagattgtcaaattctgttcgcttactgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT