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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGTTGCAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtccacagggtttacattaccgtcggtaaccgcgtggttaccgcggttactggccttaccgcggggtacggtaatagaaaaaccacgataacct...

Basic information

species Oryza sativa
transcript LOC_Os03g49600.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599133|gb|CK009661.1|CK009661
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29667348|gb|CB663623.1|CB663623
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58655963|gb|CK044643.1|CK044643
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58680369|gb|CK069056.1|CK069056
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58679305|gb|CK067992.1|CK067992
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|5004341|gb|AU069490.1|AU069490
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58597861|gb|CK008389.1|CK008389
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58587911|gb|CF986219.1|CF986219
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGT
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGT
EST: gi|58684594|gb|CK073281.1|CK073281
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29636221|gb|CB641230.1|CB641230
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58598211|gb|CK008739.1|CK008739
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33793788|gb|CF322778.1|CF322778
EST:     ATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: ATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33797376|gb|CF324550.1|CF324550
EST:     ATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: ATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|14189009|gb|AU183652.1|AU183652
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58601425|gb|CK011953.1|CK011953
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58661822|gb|CK050502.1|CK050502
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58601658|gb|CK012186.1|CK012186
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58686123|gb|CK074810.1|CK074810
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58656764|gb|CK045444.1|CK045444
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|88667088|gb|CI719224.1|CI719224
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTC
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTC
EST: gi|58669383|gb|CK058069.1|CK058069
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29672036|gb|CB668311.1|CB668311
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|11026259|gb|AU162860.1|AU162860
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAAATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58655839|gb|CK044519.1|CK044519
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GGAAGATGTTA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagG-AAGATGTTA
EST: gi|88443653|gb|CI591878.1|CI591878
EST:     CAGGAAATCAGAATGGAGATGTTGCGACGGATCAATATCATCGCTATAAG                         GGAGATGTTAATCTCATGAAAAGTTTGAATT
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATT
EST: gi|58665090|gb|CK053776.1|CK053776
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58677218|gb|CK065905.1|CK065905
EST:     GGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: GGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33794165|gb|CF322973.1|CF322973
EST:     AGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: AGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|13423190|gb|AU176521.1|AU176521
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58589976|gb|CF988284.1|CF988284
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58592952|gb|CF991260.1|CF991260
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58670653|gb|CK059339.1|CK059339
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58655284|gb|CK043964.1|CK043964
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58682006|gb|CK070693.1|CK070693
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58680064|gb|CK068751.1|CK068751
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58674624|gb|CK063311.1|CK063311
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29657770|gb|CB654045.1|CB654045
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|15852844|gb|BI805640.1|BI805640
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAA-TTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58603614|gb|CK014142.1|CK014142
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33795224|gb|CF323484.1|CF323484
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33675008|gb|CF303247.1|CF303247
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|8859885|gb|AU097203.1|AU097203
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58676386|gb|CK065073.1|CK065073
EST:     AGGAAATCAGAATGGAGATGTTGCGACAGATCAAGTATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATG
genomic: AGGAAATCAGAATGGAGATGTTGCGACAGATCAA-TATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATG
EST: gi|58677937|gb|CK066624.1|CK066624
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|40490189|gb|BX899802.1|BX899802
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58683697|gb|CK072384.1|CK072384
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58681752|gb|CK070439.1|CK070439
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29635607|gb|CB640616.1|CB640616
EST:     CAGGAAATCANAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58653917|gb|CK042597.1|CK042597
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTT
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTT
EST: gi|29643770|gb|CB648777.1|CB648777
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58684613|gb|CK073300.1|CK073300
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29635223|gb|CB640232.1|CB640232
EST:     CAGGAAATCANAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58659974|gb|CK048654.1|CK048654
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58675601|gb|CK064288.1|CK064288
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29638180|gb|CB643189.1|CB643189
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58677515|gb|CK066202.1|CK066202
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58685477|gb|CK074164.1|CK074164
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58680012|gb|CK068699.1|CK068699
EST:     CATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58685224|gb|CK073911.1|CK073911
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         -A---TGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29678657|gb|CB674932.1|CB674932
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58656652|gb|CK045332.1|CK045332
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|8860126|gb|AU097444.1|AU097444
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58655540|gb|CK044220.1|CK044220
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58658330|gb|CK047010.1|CK047010
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58682160|gb|CK070847.1|CK070847
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58612837|gb|CK040549.1|CK040549
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58601042|gb|CK011570.1|CK011570
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGT
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGT
EST: gi|58680065|gb|CK068752.1|CK068752
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58677281|gb|CK065968.1|CK065968
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58663549|gb|CK052235.1|CK052235
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29629596|gb|CB634605.1|CB634605
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|14189007|gb|AU183650.1|AU183650
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58658921|gb|CK047601.1|CK047601
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58679788|gb|CK068475.1|CK068475
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33795297|gb|CF323520.1|CF323520
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58669127|gb|CK057813.1|CK057813
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|14189008|gb|AU183651.1|AU183651
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|88358937|gb|CI619441.1|CI619441
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATACG                         GAAGATGTTAATCTCATGAAAAGTTTG
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTG
EST: gi|58658818|gb|CK047498.1|CK047498
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58593585|gb|CF991893.1|CF991893
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29635878|gb|CB640887.1|CB640887
EST:     CAGGAAATCANAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29667382|gb|CB663657.1|CB663657
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|58678308|gb|CK066995.1|CK066995
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|33674893|gb|CF303132.1|CF303132
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29638848|gb|CB643857.1|CB643857
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|8859114|gb|AU096432.1|AU096432
EST:     CAGGAAATCAGAATGGAGATGTTGCGACANATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
EST: gi|29671916|gb|CB668191.1|CB668191
EST:     CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAG                         GAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA
genomic: CAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtcc ... tctggaacagGAAGATGTTAATCTCATGAAAAGTTTGAATTTTGATGCCTACCGGTTTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAATGTTGCAGGAAATCAGAATGGAGATGTTGCGACAGATCAATATCATCGCTATAAGgtactagtccacagggtttacattaccgtcggtaaccgcgtggttaccgcggttactggccttaccgcggggtacggtaatagaaaaaccacgataacct

- - - - - - - - - - - TGGAGA
- - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - -  AGATCA